All papers authored by Shane A. McCarthy
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Nathan Vranken ,
Carla Hoge ,
Madison R. Lichak,
Amy L. Norovich ,
Kerel X. Francis ,
Julia Camacho-Garcia ,
Iliana Bista ,
Jonathan Wood ,
Shane McCarthy ,
William Chow ,
Heok Hui Tan ,
Kerstin Howe ,
Sepalika Bandara,
Johannes von Lintig
and 4 other authors
Genomic consequences of domestication of the Siamese fighting fish
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James K. Bonfield ,
Jennifer Liddle ,
John Marshall ,
Valeriu Ohan ,
Martin O. Pollard ,
Andrew Whitwham ,
Thomas Keane ,
Shane A. McCarthy ,
Robert M. Davies ,
Heng Li
Twelve years of SAMtools and BCFtools
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Shane A. McCarthy ,
McCarthy Sa,
Ruoyun Hui ,
Hui R.,
Chen Y.,
Mohamed A. Almarri ,
Almarri Ma,
Ayub Q.,
Qasim Ayub ,
Petr Danecek ,
Danecek P.,
Yuan Chen,
Sabine Felkel
and 27 other authors
Insights into human genetic variation and population history from 929 diverse genomes
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Shane A. McCarthy ,
Jonathan Wood ,
Kerstin Howe ,
Yadong Wang,
Richard Durbin
Identifying and removing haplotypic duplication in primary genome assemblies
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Shane A. McCarthy ,
Richard A. Durbin
Crumble: reference free lossy compression of sequence quality values
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Shane A. McCarthy
BCFtools/csq: haplotype-aware variant consequences
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Matti Pirinen,
Shane McCarthy ,
Klaudia Walter ,
Seppo Koskinen,
Veikko Salomaa,
Mark Daly,
Richard Durbin ,
Aarno Palotie,
Tero Aittokallio,
Samuli Ripatti
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Richard Durbin,
Kevin Talbot,
Michele Hu,
Caleb Webber ,
Chris P. Ponting,
Richard Wade-Martins
Whole-exome sequencing of 228 patients with sporadic Parkinson’s disease
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Tariq Ahmad,
Cathryn Edwards ,
Eva Goncalves Serra,
Ailsa Hart,
Chris Hawkey,
John C. Mansfield,
Craig Mowat
and 16 other authors
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Rodriguez Flores Jl,
Ritchie Gr
and 473 other authors
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.
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Narasimhan Vm,
Christopher L. Baker,
Konrad J. Karczewski ,
Hunt Ka,
Dan Mason,
Michael R. Barnes,
Anthony H. Barnett,
Nicholas A. Bockett,
Monkol Lek,
Baker Cl
and 30 other authors
Health and population effects of rare gene knockouts in adult humans with related parents
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Martin O. Pollard ,
Qasim Ayub ,
Stephen Wilcox,
Leah Wilcox,
Peter McAllister,
Lesley Williams,
Yali Xue,
R. John Mitchell,
Chris Tyler-Smith
Deep Roots for Aboriginal Australian Y Chromosomes
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A reference panel of 64,976 haplotypes for genotype imputation
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A global reference for human genetic variation
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Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel
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Nicole Soranzo Production group Senduran Bala,
Peter Clapham,
Xueqin Guo,
Guy Coates,
Tony Cox,
Allan Daly,
Yuanping Du
and 270 other authors
The UK10K project identifies rare variants in health and disease
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Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture
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Yuan Chen,
Shane McCarthy ,
Yiping Hou,
Ignazio Carbone,
Yali Xue,
Chris Tyler-Smith
A calibrated human Y-chromosomal phylogeny based on resequencing
Download from genome.cshlp.org
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Asger Hobolth,
Y. Amy Tang,
Tuuli Lappalainen,
Ge E. Jordan,
Thomas Mailund,
Mc C. Ward,
Tomas Marques-Bonet,
Shane McCarthy ,
Jy Y. Dutheil,
Ya Amy Tang
and 59 other authors
Insights into hominid evolution from the gorilla genome sequence.
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