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Papers authored by Aleksei Aksimentiev

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2009 Aleksei Aksimentiev

ORCID

, Robert K. Brunner, Eduardo Cruz-Chú, Jeffrey Comer, Klaus Schulten

Modeling Transport Through Synthetic Nanopores

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Eduardo R. Cruz Chu, Aleksei Aksimentiev

ORCID

, Klaus Schulten

Ionic Current Rectification Through Silica Nanopores.

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Jeffrey Comer, Valentin Dimitrov, Qian Zhao, Gregory Timp, Aleksei Aksimentiev

ORCID

Microscopic Mechanics of Hairpin DNA Translocation through Synthetic Nanopores

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2008 Binquan Luan, Aleksei Aksimentiev

ORCID

DNA Attraction in Monovalent and Divalent Electrolytes

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Rogan Carr, Ira A. Weinstock, Asipu Sivaprasadarao, Achim Müller, Aleksei Aksimentiev

ORCID

Synthetic Ion Channels via Self-Assembly: a Route for Embedding Porous Polyoxometalate Nanocapsules in Lipid Bilayer Membranes

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Binquan Luan, Aleksei Aksimentiev

ORCID

Strain softening in stretched DNA

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Binquan Luan, Aleksei Aksimentiev

ORCID

Electro-osmotic screening of the DNA charge in a nanopore

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Vadim Cherezov, Wei Liu, Jeremy P. Derrick

ORCID

, Binquan Luan, Aleksei Aksimentiev

ORCID

, Vsevolod Katritch, Martin Caffrey

In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin

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Q. Zhao, J. Comer, V. Dimitrov, S. Yemenicioglu, A. Aksimentiev

ORCID

, G. Timp

Stretching and unzipping nucleic acid hairpins using a synthetic nanopore

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Aleksei Aksimentiev

ORCID

, Robert Brunner, Jordi Cohen, Jeffrey Comer, Eduardo Cruz-Chu, David Hardy, Aruna Rajan, Amy Shih, Grigori Sigalov, Ying Yin, Klaus Schulten

Computer Modeling in Biotechnology

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2007 Grigori Sigalov, Jeffrey Comer, Gregory Timp, Aleksei Aksimentiev

ORCID

Detection of DNA sequences using an alternating electric field in a nanopore capacitor

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Binquan Luan, Martin Caffrey, Aleksei Aksimentiev

ORCID

Structure Refinement of the OpcA Adhesin Using Molecular Dynamics

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Q. Zhao, G. Sigalov, V. Dimitrov, B. Dorvel, U. Mirsaidov

ORCID

, S. Sligar, and A. Aksimentiev

ORCID

, G. Timp

Detecting SNPs using a Synthetic Nanopore

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David B. Wells, Volha Abramkina, Aleksei Aksimentiev

ORCID

Exploring transmembrane transport through α-hemolysin with grid-steered molecular dynamics

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2006 Eduardo R. Cruz Chu, Aleksei Aksimentiev

ORCID

, Aleksei Aksimentiev,†,§ And, Klaus Schulten

Water−Silica Force Field for Simulating Nanodevices

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Maria E. Gracheva, Aleksei Aksimentiev

ORCID

, Jean-Pierre Leburton

Electrical signatures of single-stranded DNA with single base mutations in a nanopore capacitor

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Deyu Lu, Aleksei Aksimentiev

ORCID

, Amy Y. Shih, Eduardo Cruz-Chu, Peter L. Freddolino, Anton Arkhipov, Klaus Schulten

The role of molecular modeling in bionanotechnology

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J. B. Heng, A. Aksimentiev

ORCID

, C. Ho, P. Marks, Y. V. Grinkova, S. Sligar, K. Schulten, G. Timp

The Electromechanics of DNA in a Synthetic Nanopore

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V. Dimitrov, A. Aksimentiev

ORCID

, K. Schulten, J. Heng, T. Sorsch, W. Mansfield, J. Miner, G. P. Watson, R. Cirelli, F. Klemens, J. Bower, E. Ferry, A. Taylor, A. Kornblit, B. Dorvel and 2 other authors

Exploring the Prospects for a Nanometer-scale Gene Chip

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Maria E. Gracheva, Anlin Xiong, Aleksei Aksimentiev

ORCID

, Klaus Schulten, Gregory Timp, Jean-Pierre Leburton

Simulation of the electric response of DNA translocation through a semiconductor nanopore–capacitor

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