Antonio Fabregat, Florian Korninger, Guilherme Viteri, Konstantinos Sidiropoulos, Pablo Marin-Garcia, Peipei Ping, Guanming Wu, Lincoln Stein, Peter D’Eustachio, Henning Hermjakob

Reactome graph database: Efficient access to complex pathway data

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Yasset Perez-Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug, Adam J. Carroll, Dylan Spalding, Justin Paschall, Mingxun Wang, Noemi del-Toro, Tobias Ternent, Peng Zhang, Nicola Buso, Nuno Bandeira and 19 other authors

Discovering and linking public omics data sets using the Omics Discovery Index

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Julie A. McMurry, Navtej Juty, Niklas Blomberg, Anthony Burdett, Tony Burdett, Tom Conlin, Nathalie Conte, Melanie Courtot, John Deck, Michel Dumontier, Donal K. Fellows, Alejandra Gonzalez-Beltran, Philipp Gormanns, Jeffrey Grethe, Janna Hastings and 32 other authors

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

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Sarala M. Wimalaratne, Nick Juty, John Kunze, Greg Janée, Julie A. McMurry, Niall Beard, Rafael Jimenez, Jeffrey S. Grethe, Henning Hermjakob, Maryann E. Martone, Tim Clark

Uniform Resolution of Compact Identifiers for Biomedical Data

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Martin Fenner, Mercè Crosas, Jeffrey S. Grethe, David Kennedy, Henning Hermjakob, Philippe Rocca-Serra, Gustavo Durand, Robin Berjon, Sebastian Karcher, Maryann Martone, Timothy Clark

A Data Citation Roadmap for Scholarly Data Repositories

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Anders Olav Garlid, Jennifer S. Polson, Peipei Ping, Keith D. Garlid, Henning Hermjakob

Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome.

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Yasset Perez-Riverol, Steve Lewis, Noemi del-Toro, David L. Tabb, Johannes Griss, Mathias Walzer, Marc Rurik, Oliver Kohlbacher, José A. Dianes, Rui Wang, Henning Hermjakob, Juan Antonio Vizcaíno

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.

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Laurent Gatto, Kasper Daniel Hansen, Michael R. Hoopmann, Henning Hermjakob, Oliver Kohlbacher, Andreas Beyer

Testing and Validation of Computational Methods for Mass Spectrometry

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Eric W. Deutsch, Christopher M. Overall, Jennifer E. Van Eyk, Young-Ki Paik, Susan T. Weintraub, Lydie Lane, Lennart Martens, Robert L. Moritz, Mark S. Baker, Gilbert S. Omenn, Yves Vandenbrouck, Ulrike Kusebauch, William S. Hancock, Ruedi Aebersold, Henning Hermjakob

Human Proteome Project mass spectrometry data interpretation guidelines 2.1

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Henning Hermjakob

The Reactome pathway Knowledgebase.

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Enrique Audain, Yassel Ramos, Yasset Perez-Riverol, Darren R. Flower, Henning Hermjakob

Accurate estimation of Isoelectric Point of Protein and Peptide based on Amino Acid Sequences

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Juan Antonio Vizcaíno, Attila Csordas, Noemi del-Toro, José A. Dianes, Ilias Lavidas, Johannes Griss, Gerhard Mayer, Florian Reisinger, Yasset Perez-Riverol, Qing-Wei Xu, Tobias Ternent, Rui Wang, Henning Hermjakob

2016 update of the PRIDE database and its related tools

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Henning Hermjakob

ms-data-core-api: An open-source, metadata-oriented library for computational proteomics.

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Henning Hermjakob

BioModels: Content, Features, Functionality, and Use.

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Henning Hermjakob

The Characterization, Design, and Function of the Mitochondrial Proteome: From Organs to Organisms.

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Nobel C. Zong, Haomin Li, Hua Li, Maggie P. Y. Lam, Christina S. Kim, Allen K. Kim, Ivette Zelaya, David Liem, David Meyer, Rafael C. Jimenez, Jacob Odeberg, Ning Deng, Hao-Jie Lu, Jeong Ho Choi, Tao Xu and 9 other authors

Integration of Cardiac Proteome Biology and Medicine by a Specialized Knowledgebase

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Henning Hermjakob

A toolkit for the mzIdentML standard: the ProteoIDViewer, the mzidLibrary and the mzidValidator.

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Henning Hermjakob

Maximising proteomics data for the scientific community

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Marija Milacic, Karen Rothfels, Guanming Wu, Robin Haw, Lincoln Stein, David Croft, Peter D'Eustachio, Henning Hermjakob

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome

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S. Orchard, Lennart Martens, R. Apweiler, Henning Hermjakob

Human Proteome Organization Proteomics Standards Initiative: data standardization, a view on developments and policy.

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