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Oxford University Press (OUP), Nucleic Acids Research, D1(44), p. D38-D47

DOI: 10.1093/nar/gkv1116

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Tools and data services registry: a community effort to document bioinformatics resources

Journal article published in 2015 by Jon Ison, Kristoffer Rapacki, Hervé Ménager, Matúš Kalaš, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard ORCID, Karel Berka ORCID, Tim Booth, Anthony Bretaudeau, Dan Bolser ORCID, Jan Brezovsky, Rita Casadio, Gianni Cesareni and other authors.
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to improvement in human health, agriculture and the environment. In support of these discoveries, a plethora of databases and tools are deployed, in technically complex and diverse implementations, across a spectrum of scientific disciplines. The corpus of documentation of these resources is fragmented across the Web, with much redundancy, and has lacked a common standard of information. The outcome is that scientists must often struggle to find, understand, compare and use the best resources for the task at hand. Here we present a community-driven curation effort, supported by ELIXIR––the European infrastructure for biological information––that aspires to a comprehensive and consistent registry of information about bioinformatics resources. The sustainable upkeep of this Tools and Data Services Registry is assured by a curation effort driven by and tailored to local needs, and shared amongst a network of engaged partners. As of November 2015, the registry includes 1785 resources, with depositions from 126 individual registrations including 52 institutional providers and 74 individuals. With community support, the registry can become a standard for dissemination of information about bioinformatics resources: we welcome everyone to join us in this common endeavour. The registry is freely available at https://bio.tools.