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MOESM7 of The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements

This paper is available in a repository.
This paper is available in a repository.

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Abstract

Additional file 7: Figure S5. Examples of BORIS binding at promoters trapped by SVA elements. The gene tracks represent cases of BORIS binding sites within genes’ promoters trapped by the indicated SVA element. The red double-headed arrows show the sequences trapped by SVAs and occupied by BORIS in K562 cells. BORIS ChIP-seq coverage and the CAGE tracks are shown for K562 cells. Expression from either minus or plus strands is shown by blue and red CAGE tracks, respectively. The particular examples are: BORIS binding site as the part of FDX1 promoter trapped by SVA-D, RHOT1 trapped by SVA-A, NDUFV2—by SVA-D, WRD33—SVA-F, PHKA1 and MMPE1—by SVA-D.