Additional file 6: Figure S6. of The impact of sequence database choice on metaproteomic results in gut microbiota studies
Published in 2016 by
Alessandro Tanca,
Antonio Palomba,
Cristina Fraumene,
Daniela Pagnozzi,
Valeria Manghina,
Massimo Deligios,
Thilo Muth,
Erdmann Rapp,
Lennart Martens,
Maria Addis,
Sergio Uzzau
Abstract
Cladograms illustrating human gut microbiota taxa detected with differential abundance when using different sequence databases. Spectral counting data obtained upon Sequest-HT/Percolator search (1Â % FDR) and MEGAN (left) or Unipept (right) lowest common ancestor (LCA) taxonomic classification were uploaded into LEfSe for differential analysis and cladogram construction. Taxa with higher abundance related to a given database are marked with the specific database color (dark blue, reads-based MG-DB; red, contigs-based MG-DB; turquoise, UniProt Bacteria). (TIF 3450 KB)