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Elsevier, Molecular and Cellular Proteomics, 7(11), p. M111.010595-1-M111.010595-10, 2012

DOI: 10.1074/mcp.m111.010595

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Scientific Workflow Management in Proteomics

Journal article published in 2012 by Jeroen S. de Bruin, André M. Deelder, Magnus Palmblad ORCID
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Data processing in proteomics can be a challenging endeavor, requiring extensive knowledge of many different software packages, all with different algorithms, data format requirements, and user interfaces. In this article we describe the integration of a number of existing programs and tools in Taverna Workbench, a scientific workflow manager currently being developed in the bioinformatics community. We demonstrate how a workflow manager provides a single, visually clear and intuitive interface to complex data analysis tasks in proteomics, from raw mass spectrometry data to protein identifications and beyond.