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Oxford University Press (OUP), Bioinformatics, 7(31), p. 1130-1132

DOI: 10.1093/bioinformatics/btu781

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QuasR: quantification and annotation of short reads in R

Journal article published in 2014 by Dimos Gaidatzis, Anita Lerch, Florian Hahne, Michael B. Stadler
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Summary: QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. QuasR supports different experiment types (including RNA-seq, ChIP-seq and Bis-seq) and analysis variants (e.g. paired-end, stranded, spliced and allele-specific), and is integrated in Bioconductor so that its output can be directly processed for statistical analysis and visualization.