We report on high spatial resolution water maser observations, using the Australia Telescope Compact Array, towards water maser sites previously identified in the H2O southern Galactic Plane Survey (HOPS). Of the 540 masers identified in the single-dish observations of Walsh et al. (2011), we detect emission in all but 31 fields. We report on 2790 spectral features (maser spots), with brightnesses ranging from 0.06 Jy to 576Jy and with velocities ranging from -238.5 to +300.5km/s. These spectral features are grouped into 631 maser sites. We have compared the positions of these sites to the literature to associate the sites with astrophysical objects. We identify 433 (69 per cent) with star formation, 121 (19 per cent) with evolved stars and 77 (12 per cent) as unknown. We find that maser sites associated with evolved stars tend to have more maser spots and have smaller angular sizes than those associated with star formation. We present evidence that maser sites associated with evolved stars show an increased likelihood of having a velocity range between 15 and 35 km/s compared to other maser sites. Of the 31 non-detections, we conclude they were not detected due to intrinsic variability and confirm previous results showing that such variable masers tend to be weaker and have simpler spectra with fewer peaks. ; Comment: Accepted for publication in MNRAS. The full preprint (718 pages, 21MB) can be downloaded from http://hops.org.au under "Publications"