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Wiley, Journal of Comparative Neurology, 2(522), p. 308-336, 2013

DOI: 10.1002/cne.23398

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IB4-binding sensory neurons in the adult rat express a novel 3′ UTR-extended isoform ofCaMK4that is associated with its localization to axons: Adult nociceptor populations express CaMKIV

This paper is available in a repository.
This paper is available in a repository.

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Abstract

Calcium/Calmodulin-dependent protein Kinase 4 (Gene and transcript: CaMK4; Protein: CaMKIV) is the nuclear effector of the Ca2+/Calmodulin Kinase (CaMK) pathway where it co-ordinates transcriptional responses. However, CaMKIV is present in the cytoplasm and axons of subpopulations of neurons, including some sensory neurons of the dorsal root ganglia (DRG), suggesting an extra-nuclear role for this protein. We observed that CaMKIV was expressed strongly in the cytoplasm and axons of a subpopulation of small diameter DRG neurons, most likely cutaneous nociceptors by virtue of their binding the isolectin IB4. In IB4+ spinal nerve axons, 20% of CaMKIV was co-localized with the endocytic marker Rab7 in axons that highly expressed CAM-Kinase-Kinase (CAMKK), an upstream activator of CaMKIV, suggesting a role for CaMKIV in signalling though signalling endosomes. Using fluorescent in situ hybridization (FISH) with riboprobes, we also observed that small diameter neurons expressed high levels of a novel 3' untranslated region (UTR) variant of CaMK4 mRNA. Using rapid amplification of cDNA ends (RACE), RT-PCR with gene-specific primers, and cDNA sequencing analyses we determined that the novel transcript contains an additional 10kb beyond the annotated gene terminus to a highly conserved alternate poly-adenylation site. qPCR analyses of fluorescent-activated cell sorted (FACS) DRG neurons confirmed that this 3'UTR-extended variant was preferentially expressed in IB4-binding neurons. Computational analyses of the 3'-UTR sequence predict that UTR-extension introduces consensus sites for RNA-binding proteins (RBPs) including the Embryonic Lethal Abnormal Vision (ELAV)/Hu family proteins. We consider the possible implications of axonal CaMKIV in the context of the unique properties of IB4-binding DRG neurons.