Abstract Caryocar brasiliense Camb. (Malpighiales: Caryocaraceae) trees have a wide distribution in the Cerrado, and it is protected by federal laws. The need to monitor and understand pest damage to crops and forests is a major motivation for the study of population distribution. The mites (Acari) population distributions on C. brasiliense are unknown. We studied seasonal mite population distribution and their ecological indices on C. brasiliense trees in Cerrado areas during three years. Greatest number of Agistemus sp. (Stigmaeidae), Histiostoma sp. (Histiostomidae), Proctolaelaps sp. (Ascidae), and diversity and species richness on leaves of C. brasiliense occurred in the autumn; Tetranychus sp.1 (Tetranychidae) on leaves in the autumn and winter; Histiostoma sp., and Proctolaelaps sp. in fruits in the summer. No significant effect of season was observed in the abundance of Eutetranychus sp., Tetranychus sp.2 (Tetranychidae) and Acaridae. The populations of Acaridae, Eutetranychus sp., Proctolaelaps sp. and Tetranychus sp.1 negatively correlated with temperature. Proctolaelaps sp. and Tetranychus sp.1 correlated negatively with rainfall and Eutetranychus sp. and Proctolaelaps sp. positively with sunlight. The period with low rainfall and relative humidity increases the phytophagous mites and their predators, especially Agistemus sp.. The Tetranychus sp. and Histiostoma sp. species may become pests in C. brasiliense in the Cerrado domain.