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Oxford University Press (OUP), Bioinformatics, 21(35), p. 4501-4503, 2019

DOI: 10.1093/bioinformatics/btz289

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INDRA-IPM: interactive pathway modeling using natural language with automated assembly

Journal article published in 2019 by Petar V. Todorov, Benjamin M. Gyori, John A. Bachman ORCID, Peter K. Sorger ORCID
This paper was not found in any repository, but could be made available legally by the author.
This paper was not found in any repository, but could be made available legally by the author.

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Abstract

Abstract Summary INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats. Availability and implementation INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra_pathway_map. The underlying web service API is available at http://api.indra.bio:8000. Supplementary information Supplementary data are available at Bioinformatics online.