@article{Calvo2008, abstract = {Monte Carlo simulations of gas-phase polyalanine peptides have been carried out with the Amber ff96 force field. A low-temperature structural transition takes place between the α-helix stable conformation and β-sheet structures, followed by the unfolding phase change. The transition state ensembles connect- ing the helix and sheet conformations are investigated by sampling the energy landscape along specific geometric order parameters as putative reaction coordinates, namely the electric dipole μ, the end-to-end distance d, and the gyration radius Rg . By performing series of shooting trajectories, the committor prob- abilities and their distributions are obtained, revealing that only the electric dipole provides a satisfactory transition coordinate for the α ↔ β interconversion. The nucleus at the transition is found to have a high helical content.}, author = {Calvo, Florent and Poulain, Pierre}, doi = {10.1140/epjd/e2008-00096-0}, journal = {The European Physical Journal D}, month = {may}, pages = {15-23}, title = {Transitions between secondary structures in isolated polyalanines}, url = {http://www.hal.inserm.fr/docs/00/32/08/28/PDF/20080403_alatrans_rev.pdf}, volume = {51}, year = {2008} }