All papers authored by Kristen L. Beck
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2022
Akshay Agarwal 
,
Kristen L. Beck ,
Sara Capponi,
Mark Kunitomi,
Gowri Nayar,
Edward Seabolt ,
Gandhar Mahadeshwar,
Simone Bianco,
Vandana Mukherjee,
James H. Kaufman
,
Kristen L. Beck ,
Sara Capponi,
Mark Kunitomi,
Gowri Nayar,
Edward Seabolt ,
Gandhar Mahadeshwar,
Simone Bianco,
Vandana Mukherjee,
James H. Kaufman
Predicting Epitope Candidates for SARS-CoV-2
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Rodolfo A. Salido ,
Cameron Martino,
Smruthi Karthikeyan,
Shi Huang,
Gibraan Rahman,
Antonio Gonzalez,
Livia S. Zaramela,
Kristen L. Beck ,
Shrikant Bhute,
Kalen Cantrell,
Anna Paola Carrieri,
Sawyer Farmer,
Niina Haiminen,
Greg Humphrey,
Ho-Cheol Kim
and 7 other authors
,
Cameron Martino,
Smruthi Karthikeyan,
Shi Huang,
Gibraan Rahman,
Antonio Gonzalez,
Livia S. Zaramela,
Kristen L. Beck ,
Shrikant Bhute,
Kalen Cantrell,
Anna Paola Carrieri,
Sawyer Farmer,
Niina Haiminen,
Greg Humphrey,
Ho-Cheol Kim
and 7 other authors
Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations
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2021
Kristen L. Beck ,
Edward Seabolt ,
Akshay Agarwal ,
Gowri Nayar ,
Simone Bianco ,
Harsha Krishnareddy ,
Timothy A. Ngo ,
Mark Kunitomi ,
Vandana Mukherjee ,
James H. Kaufman
,
Edward Seabolt ,
Akshay Agarwal ,
Gowri Nayar ,
Simone Bianco ,
Harsha Krishnareddy ,
Timothy A. Ngo ,
Mark Kunitomi ,
Vandana Mukherjee ,
James H. Kaufman
Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes
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George Armstrong ,
Kalen Cantrell,
Shi Huang ,
Daniel McDonald ,
Niina Haiminen ,
Anna Paola Carrieri ,
Qiyun Zhu ,
Antonio Gonzalez,
Imran McGrath ,
Kristen L. Beck ,
Daniel Hakim ,
Aki S. Havulinna ,
Guillaume Méric ,
Teemu Niiranen ,
Leo Lahti
and 8 other authors
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,
Kalen Cantrell,
Shi Huang ,
Daniel McDonald ,
Niina Haiminen ,
Anna Paola Carrieri ,
Qiyun Zhu ,
Antonio Gonzalez,
Imran McGrath ,
Kristen L. Beck ,
Daniel Hakim ,
Aki S. Havulinna ,
Guillaume Méric ,
Teemu Niiranen ,
Leo Lahti
and 8 other authors
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Farshad Firouzi ,
Bahar Farahani ,
Mahmoud Daneshmand,
Kathy Grise ,
Jaeseung Song ,
Roberto Saracco ,
Lucy Lu Wang,
Kyle Lo,
Plamen Angelov ,
Eduardo Soares,
Po-Shen Loh,
Zeynab Talebpour,
Reza Moradi,
Mohsen Goodarzi,
Haleh Ashraf
and 16 other authors
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,
Bahar Farahani ,
Mahmoud Daneshmand,
Kathy Grise ,
Jaeseung Song ,
Roberto Saracco ,
Lucy Lu Wang,
Kyle Lo,
Plamen Angelov ,
Eduardo Soares,
Po-Shen Loh,
Zeynab Talebpour,
Reza Moradi,
Mohsen Goodarzi,
Haleh Ashraf
and 16 other authors
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Pajau Vangay ,
Josephine Burgin ,
Anjanette Johnston,
Kristen L. Beck ,
Daniel C. Berrios ,
Kai Blumberg ,
Shane Canon,
Patrick Chain,
John-Marc Chandonia ,
Danielle Christianson,
Sylvain V. Costes,
Joan Damerow,
William D. Duncan,
Jose Pablo Dundore-Arias ,
Kjiersten Fagnan
and 27 other authors
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,
Josephine Burgin ,
Anjanette Johnston,
Kristen L. Beck ,
Daniel C. Berrios ,
Kai Blumberg ,
Shane Canon,
Patrick Chain,
John-Marc Chandonia ,
Danielle Christianson,
Sylvain V. Costes,
Joan Damerow,
William D. Duncan,
Jose Pablo Dundore-Arias ,
Kjiersten Fagnan
and 27 other authors
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Erika Ganda ,
Kristen L. Beck ,
Niina Haiminen ,
Justin D. Silverman ,
Ban Kawas,
Brittany D. Cronk ,
Renee R. Anderson,
Laura B. Goodman ,
Martin Wiedmann
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,
Kristen L. Beck ,
Niina Haiminen ,
Justin D. Silverman ,
Ban Kawas,
Brittany D. Cronk ,
Renee R. Anderson,
Laura B. Goodman ,
Martin Wiedmann
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Kalen Cantrell,
Marcus W. Fedarko ,
Gibraan Rahman ,
Daniel McDonald,
Yimeng Yang,
Thant Zaw,
Antonio Gonzalez,
Stefan Janssen ,
Mehrbod Estaki ,
Niina Haiminen ,
Kristen L. Beck ,
Qiyun Zhu ,
Erfan Sayyari,
James T. Morton,
George Armstrong
and 15 other authors
,
Gibraan Rahman ,
Daniel McDonald,
Yimeng Yang,
Thant Zaw,
Antonio Gonzalez,
Stefan Janssen ,
Mehrbod Estaki ,
Niina Haiminen ,
Kristen L. Beck ,
Qiyun Zhu ,
Erfan Sayyari,
James T. Morton,
George Armstrong
and 15 other authors
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets
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Pajau Vangay ,
Josephine Burgin ,
Anjanette Johnston,
Kristen L. Beck ,
Daniel C. Berrios ,
Kai Blumberg ,
Shane Canon,
Patrick Chain,
John-Marc Chandonia ,
Danielle Christianson,
Sylvain V. Costes,
Joan Damerow,
William D. Duncan,
Jose Pablo Dundore-Arias ,
Kjiersten Fagnan
and 27 other authors
Download from journals.asm.org
,
Josephine Burgin ,
Anjanette Johnston,
Kristen L. Beck ,
Daniel C. Berrios ,
Kai Blumberg ,
Shane Canon,
Patrick Chain,
John-Marc Chandonia ,
Danielle Christianson,
Sylvain V. Costes,
Joan Damerow,
William D. Duncan,
Jose Pablo Dundore-Arias ,
Kjiersten Fagnan
and 27 other authors
Download from journals.asm.org
Kristen L. Beck ,
Niina Haiminen ,
David Chambliss ,
Stefan Edlund ,
Mark Kunitomi,
B. Carol Huang,
B. Carol Huang,
Nguyet Kong ,
Balasubramanian Ganesan ,
Robert Baker,
Peter Markwell,
Ban Kawas ,
Matthew Davis,
Robert J. Prill,
Harsha Krishnareddy
and 8 other authors
,
Niina Haiminen ,
David Chambliss ,
Stefan Edlund ,
Mark Kunitomi,
B. Carol Huang,
B. Carol Huang,
Nguyet Kong ,
Balasubramanian Ganesan ,
Robert Baker,
Peter Markwell,
Ban Kawas ,
Matthew Davis,
Robert J. Prill,
Harsha Krishnareddy
and 8 other authors
Monitoring the microbiome for food safety and quality using deep shotgun sequencing
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2019
Niina Haiminen ,
Stefan Edlund ,
David Chambliss ,
Mark Kunitomi,
Bart C. Weimer ,
Balasubramanian Ganesan ,
Robert Baker,
Peter Markwell,
Matthew Davis,
B. Carol Huang,
Nguyet Kong ,
Robert J. Prill,
Carl H. Marlowe,
André Quintanar,
Sophie Pierre
and 4 other authors
,
Stefan Edlund ,
David Chambliss ,
Mark Kunitomi,
Bart C. Weimer ,
Balasubramanian Ganesan ,
Robert Baker,
Peter Markwell,
Matthew Davis,
B. Carol Huang,
Nguyet Kong ,
Robert J. Prill,
Carl H. Marlowe,
André Quintanar,
Sophie Pierre
and 4 other authors
Food authentication from shotgun sequencing reads with an application on high protein powders
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