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All papers authored by Jia-Yu Chen

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2023 Jun Hu, Zhe Zhang, Sai Xiao, Yalei Cao, Yinghong Chen, Jiaming Weng, Hui Jiang, Wei Li, Jia-Yu Chen

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, Chao Liu

Microhomology-mediated circular DNA formation from oligonucleosomal fragments during spermatogenesis

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2022 Yi-Jou Huang, Jia-Yu Chen

ORCID

, Ming Yan, Amanda G. Davis

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, Sayuri Miyauchi, Liang Chen

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, Yajing Hao, Sigrid Katz, Rafael Bejar

ORCID

, Omar Abdel-Wahab, Xiang-Dong Fu

ORCID

, Dong-Er Zhang

RUNX1 deficiency cooperates with SRSF2 mutation to induce multilineage hematopoietic defects characteristic of MDS

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Yang Tan, Xueqing Sun, Yizhu Xu, Bingjie Tang, Shuaiqi Xu, Dong Lu, Yan Ye, Xiaomin Luo

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, Xu Diao, Fulong Li, Tianyi Wang, Jiayu Chen

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, Qiang Xu, Xingxin Wu

ORCID

Small molecule targeting CELF1 RNA-binding activity to control HSC activation and liver fibrosis

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Jia-Yu Chen

ORCID

, Do-Hwan Lim, Liang Chen, Yongli Zhou, Fangliang Zhang, Changwei Shao, Xuan Zhang, Hairi Li, Dong Wang, Dong-Er Zhang, Xiang-Dong Fu

Systematic Evaluation of Different R-loop Mapping Methods: Achieving Consensus, Resolving Discrepancies and Uncovering Distinct Types of RNA:DNA Hybrids

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2021 Yueyao Wang

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, Yao Wang

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ORCID

, Xin Sun

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, Zhe Li

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, Jia-Yu Chen

ORCID

ORCID

An RNA-cleaving threose nucleic acid enzyme capable of single point mutation discrimination

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Ruoyao Lin, Xiaoming Zhong, Yongli Zhou, Huichao Geng, Qingxi Hu, Zhihao Huang, Jun Hu, Xiang-Dong Fu, Liang Chen, Jia-Yu Chen

ORCID

R-loopBase: a knowledgebase for genome-wide R-loop formation and regulation

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Eric L. Van Nostrand

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, Peter Freese, Gabriel A. Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M. Blue

ORCID

, Jia-Yu Chen

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, Neal A. L. Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman

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, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette and 24 other authors

Author Correction: A large-scale binding and functional map of human RNA-binding proteins

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2020 Yajing Hao

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, Dongpeng Wang, Shuheng Wu, Xiao Li, Changwei Shao

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, Peng Zhang, Jia-Yu Chen

ORCID

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, Xiang-Dong Fu

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, Runsheng Chen

ORCID

ORCID

Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division

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Jun Xu, Wei Wang, Liang Xu, Jia-Yu Chen

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, Jenny Chong, Juntaek Oh, Andres E. Leschziner

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, Xiang-Dong Fu, Dong Wang

ORCID

Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers

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Jia-Yu Chen

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Perspectives on ENCODE

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Federico Abascal, Omar Al Jammal, Y. Wang, Z. Wei, K. Zhang, L. Zhang, Q. Zhang, X.-O. Zhang, Y. Zhang, Z. Zhang, L. Ramirez, Henry E. Pratt, Sebastian Preissl, Jonathan K. Pritchard, Yuri Pritykin and 564 other authors

Expanded encyclopaedias of DNA elements in the human and mouse genomes.

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2019 Yajing Hao, Dongpeng Wang, Shuheng Wu, Xiao Li, Changwei Shao, Peng Zhang, Jia-Yu Chen

ORCID

, Do-Hwan Lim, Xiang-Dong Fu, Shunmin He, Runsheng Chen

Trading Genome Vulnerability for Stable Genetic Inheritance: Active Retrotransposons Help Maintain Pericentromeric Heterochromatin Required for Faithful Cell Division

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Canzhao Liu, Simone Spinozzi, Jia-Yu Chen

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, Xi Fang, Wei Feng, Guy Perkins, Paola Cattaneo, Nuno Guimarães-Camboa, Nancy D. Dalton, Kirk L. Peterson, Tongbin Wu, Kunfu Ouyang, Xiang-Dong Fu, Sylvia M. Evans, Ju Chen

Nexilin Is a New Component of Junctional Membrane Complexes Required for Cardiac T-Tubule Formation

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Rui Xiao, Jia-Yu Chen

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, Zhengyu Liang, Daji Luo, Geng Chen, Zhi John Lu, Yang Chen, Bing Zhou, Hairi Li, Xian Du, Yang Yang, Mingkui San, Xintao Wei, Wen Liu, Eric Lécuyer and 6 other authors

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription

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Jia-Yu Chen

ORCID

, Xuan Zhang, Xiang-Dong Fu

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ORCID

R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1

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Ni A. An, Wanqiu Ding, Xin-Zhuang Yang, Jiguang Peng, Bin Z. He, Qing Sunny Shen, Fujian Lu, Aibin He, Yong E. Zhang, Bertrand Chin-Ming Tan, Jia-Yu Chen

ORCID

ORCID

Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates

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2018 Yao Xiao

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, Can Wang, Jia-Yu Chen

ORCID

, Fujian Lu, Jue Wang, Ning Hou, Xiaomin Hu, Fanxin Zeng, Dongwei Ma, Xueting Sun, Yi Ding, Yan Zhang, Wen Zheng, Yuli Liu, Haibao Shang and 9 other authors

Deficiency of PRKD2 triggers hyperinsulinemia and metabolic disorders

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Liang Chen, Jia-Yu Chen

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, Yi-Jou Huang, Ying Gu, Jinsong Qiu, Hao Qian, Changwei Shao, Xuan Zhang, Jing Hu, Hairi Li, Shunmin He, Yu Zhou, Omar Abdel-Wahab, Dong-Er Zhang, Xiang-Dong Fu

The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations

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2017 Liang Chen, Jia-Yu Chen

ORCID

, Xuan Zhang, Ying Gu, Rui Xiao, Changwei Shao, Peng Tang, Hao Qian, Daji Luo, Hairi Li, Yu Zhou, Dong-Er Zhang, Xiang-Dong Fu

R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters

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E. L. van Nostrand, Eric L. Van Nostrand

ORCID

, Peter Freese, Gabriel A. Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M. Blue

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, Neal A. L. Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman

ORCID

, Jiayu-Y. Chen

ORCID

, Lijun Zhan, Louis Philip Benoit Bouvrette and 29 other authors

A Large-Scale Binding and Functional Map of Human RNA Binding Proteins

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