All papers authored by François Aguet
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2023
Lukas F. K. Kuderna 
,
Jacob C. Ulirsch,
Sabrina Rashid,
Mohamed Ameen,
Laksshman Sundaram,
Glenn Hickey ,
Anthony J. Cox,
Hong Gao ,
Arvind Kumar,
Francois Aguet ,
Matthew J. Christmas,
Hiram Clawson,
Maximilian Haeussler,
Mareike C. Janiak ,
Martin Kuhlwilm
and 77 other authors
,
Jacob C. Ulirsch,
Sabrina Rashid,
Mohamed Ameen,
Laksshman Sundaram,
Glenn Hickey ,
Anthony J. Cox,
Hong Gao ,
Arvind Kumar,
Francois Aguet ,
Matthew J. Christmas,
Hiram Clawson,
Maximilian Haeussler,
Mareike C. Janiak ,
Martin Kuhlwilm
and 77 other authors
Identification of constrained sequence elements across 239 primate genomes
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Seyedeh M. Zekavat ,
Zhi Yu ,
Trevor P. Fidler,
Fidler Tp,
Yunfeng Ruan ,
Caitlyn Vlasschaert ,
Md Mesbah Uddin ,
Tetsushi Nakao ,
J. Brett Heimlich ,
Taralynn Mack,
Christopher J. Gibson ,
Uddin Mm,
Abhishek Niroula ,
Gabriel K. Griffin,
Gina M. Peloso
and 20 other authors
,
Zhi Yu ,
Trevor P. Fidler,
Fidler Tp,
Yunfeng Ruan ,
Caitlyn Vlasschaert ,
Md Mesbah Uddin ,
Tetsushi Nakao ,
J. Brett Heimlich ,
Taralynn Mack,
Christopher J. Gibson ,
Uddin Mm,
Abhishek Niroula ,
Gabriel K. Griffin,
Gina M. Peloso
and 20 other authors
Genetic modification of inflammation- and clonal hematopoiesis–associated cardiovascular risk
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Petko P. Fiziev ,
Jeremy McRae ,
Jacob C. Ulirsch ,
Jacqueline S. Dron ,
Tobias Hamp,
Yanshen Yang,
Pierrick Wainschtein ,
Zijian Ni ,
Joshua G. Schraiber,
Hong Gao ,
Dylan Cable,
Yair Field ,
Francois Aguet ,
Marc Fasnacht,
Ahmed Metwally
and 6 other authors
,
Jeremy McRae ,
Jacob C. Ulirsch ,
Jacqueline S. Dron ,
Tobias Hamp,
Yanshen Yang,
Pierrick Wainschtein ,
Zijian Ni ,
Joshua G. Schraiber,
Hong Gao ,
Dylan Cable,
Yair Field ,
Francois Aguet ,
Marc Fasnacht,
Ahmed Metwally
and 6 other authors
Rare penetrant mutations confer severe risk of common diseases
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Hong Gao ,
João Valsecchi do Amaral ,
Tobias Hamp,
Jeffrey Ede,
Joshua G. Schraiber,
Jeremy McRae ,
Moriel Singer-Berk ,
Yanshen Yang,
Anastasia S. D. Dietrich ,
Petko P. Fiziev ,
Lukas F. K. Kuderna ,
Laksshman Sundaram ,
Yibing Wu,
Aashish Adhikari ,
Yair Field
and 87 other authors
,
João Valsecchi do Amaral ,
Tobias Hamp,
Jeffrey Ede,
Joshua G. Schraiber,
Jeremy McRae ,
Moriel Singer-Berk ,
Yanshen Yang,
Anastasia S. D. Dietrich ,
Petko P. Fiziev ,
Lukas F. K. Kuderna ,
Laksshman Sundaram ,
Yibing Wu,
Aashish Adhikari ,
Yair Field
and 87 other authors
The landscape of tolerated genetic variation in humans and primates
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2022
Rebecca Boiarsky ,
Nicholas J. Haradhvala ,
Jean-Baptiste Alberge,
Romanos Sklavenitis-Pistofidis,
Tarek H. Mouhieddine ,
Oksana Zavidij,
Ming-Chieh Shih,
Danielle Firer,
Mendy Miller,
Shankara K. Anand,
Habib El-Khoury,
François Aguet ,
David Sontag ,
Irene M. Ghobrial ,
Gad Getz
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,
Nicholas J. Haradhvala ,
Jean-Baptiste Alberge,
Romanos Sklavenitis-Pistofidis,
Tarek H. Mouhieddine ,
Oksana Zavidij,
Ming-Chieh Shih,
Danielle Firer,
Mendy Miller,
Shankara K. Anand,
Habib El-Khoury,
François Aguet ,
David Sontag ,
Irene M. Ghobrial ,
Gad Getz
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Tomer M. Yaron ,
Brook E. Heaton ,
Tyler M. Levy ,
Jared L. Johnson ,
Tristan X. Jordan ,
Benjamin M. Cohen ,
Alexander Kerelsky,
Ting-Yu Lin ,
Katarina M. Liberatore,
Danielle K. Bulaon ,
Samantha J. Van Nest ,
Nikos Koundouros ,
Edward R. Kastenhuber,
Marisa N. Mercadante,
Kripa Shobana-Ganesh
and 32 other authors
,
Brook E. Heaton ,
Tyler M. Levy ,
Jared L. Johnson ,
Tristan X. Jordan ,
Benjamin M. Cohen ,
Alexander Kerelsky,
Ting-Yu Lin ,
Katarina M. Liberatore,
Danielle K. Bulaon ,
Samantha J. Van Nest ,
Nikos Koundouros ,
Edward R. Kastenhuber,
Marisa N. Mercadante,
Kripa Shobana-Ganesh
and 32 other authors
Host protein kinases required for SARS-CoV-2 nucleocapsid phosphorylation and viral replication
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Taibo Li,
Nicole Ferraro,
Benjamin J. Strober,
Francois Aguet ,
Silva Kasela,
Marios Arvanitis,
Bohan Ni,
Laurens van de Wiel,
Elliot Hershberg,
Kristin Ardlie,
Dan E. Arking,
Rebecca L. Beer,
Jennifer Brody,
Thomas W. Blackwell,
Clary Clish
and 23 other authors
,
Silva Kasela,
Marios Arvanitis,
Bohan Ni,
Laurens van de Wiel,
Elliot Hershberg,
Kristin Ardlie,
Dan E. Arking,
Rebecca L. Beer,
Jennifer Brody,
Thomas W. Blackwell,
Clary Clish
and 23 other authors
The functional impact of rare variation across the regulatory cascade
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Binyamin A. Knisbacher ,
Ziao Lin ,
Cynthia K. Hahn,
Ferran Nadeu ,
Martí Duran-Ferrer ,
Kristen E. Stevenson,
Eugen Tausch,
Julio Delgado,
Alex Barbera-Mourelle,
Amaro Taylor-Weiner,
Pablo Bousquets-Muñoz ,
Ander Diaz-Navarro ,
Andrew Dunford,
Shankara Anand,
Helene Kretzmer
and 24 other authors
,
Ziao Lin ,
Cynthia K. Hahn,
Ferran Nadeu ,
Martí Duran-Ferrer ,
Kristen E. Stevenson,
Eugen Tausch,
Julio Delgado,
Alex Barbera-Mourelle,
Amaro Taylor-Weiner,
Pablo Bousquets-Muñoz ,
Ander Diaz-Navarro ,
Andrew Dunford,
Shankara Anand,
Helene Kretzmer
and 24 other authors
Molecular map of chronic lymphocytic leukemia and its impact on outcome
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Dafni A. Glinos ,
Garrett Garborcauskas,
Paul Hoffman ,
Nava Ehsan,
Lihua Jiang,
Alper Gokden ,
Xiaoguang Dai,
François Aguet ,
Kathleen L. Brown,
Kiran Garimella,
Tera Bowers,
Maura Costello,
Kristin Ardlie,
Ruiqi Jian ,
Nathan R. Tucker
and 9 other authors
,
Garrett Garborcauskas,
Paul Hoffman ,
Nava Ehsan,
Lihua Jiang,
Alper Gokden ,
Xiaoguang Dai,
François Aguet ,
Kathleen L. Brown,
Kiran Garimella,
Tera Bowers,
Maura Costello,
Kristin Ardlie,
Ruiqi Jian ,
Nathan R. Tucker
and 9 other authors
Transcriptome variation in human tissues revealed by long-read sequencing
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Qin Li ,
Michael J. Gloudemans,
Jonathan M. Geisinger,
Boming Fan,
François Aguet ,
Tao Sun ,
Gokul Ramaswami,
Yang I. Li,
Jin-Biao Ma,
Jonathan K. Pritchard ,
Stephen B. Montgomery ,
Jin Billy Li
,
Michael J. Gloudemans,
Jonathan M. Geisinger,
Boming Fan,
François Aguet ,
Tao Sun ,
Gokul Ramaswami,
Yang I. Li,
Jin-Biao Ma,
Jonathan K. Pritchard ,
Stephen B. Montgomery ,
Jin Billy Li
RNA editing underlies genetic risk of common inflammatory diseases
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Gökcen Eraslan ,
Eugene Drokhlyansky ,
Shankara Anand ,
Evgenij Fiskin ,
Ayshwarya Subramanian ,
Michal Slyper ,
Jiali Wang ,
Nicholas Van Wittenberghe ,
John M. Rouhana,
Julia Waldman ,
Orr Ashenberg ,
Monkol Lek,
Danielle Dionne ,
Thet Su Win,
Michael S. Cuoco
and 11 other authors
,
Eugene Drokhlyansky ,
Shankara Anand ,
Evgenij Fiskin ,
Ayshwarya Subramanian ,
Michal Slyper ,
Jiali Wang ,
Nicholas Van Wittenberghe ,
John M. Rouhana,
Julia Waldman ,
Orr Ashenberg ,
Monkol Lek,
Danielle Dionne ,
Thet Su Win,
Michael S. Cuoco
and 11 other authors
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function
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Ryan Schubert,
Heming Wang,
Elyse Geoffroy,
Isabelle Gregga,
Ashley J. Mulford,
Francois Aguet ,
Kristin Ardlie,
Robert Gerszten,
Clary Clish,
David Van Den Berg,
Kent D. Taylor,
Peter Durda,
W. Craig Johnson,
W. Craig Johnson,
Elaine Cornell
and 19 other authors
,
Kristin Ardlie,
Robert Gerszten,
Clary Clish,
David Van Den Berg,
Kent D. Taylor,
Peter Durda,
W. Craig Johnson,
W. Craig Johnson,
Elaine Cornell
and 19 other authors
Protein prediction for trait mapping in diverse populations
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2021
John M. Rouhana,
Jiali Wang,
Gokcen Eraslan,
Shankara Anand,
Andrew R. Hamel,
Brian Cole,
Aviv Regev,
François Aguet ,
Kristin G. Ardlie,
Ayellet V. Segrè
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,
Kristin G. Ardlie,
Ayellet V. Segrè
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Tamara Ouspenskaia ,
Travis Law ,
Karl R. Clauser,
Susan Klaeger ,
Siranush Sarkizova,
François Aguet ,
Bo Li ,
Elena Christian ,
Binyamin A. Knisbacher ,
Phuong M. Le,
Christina R. Hartigan,
Hasmik Keshishian,
Annie Apffel ,
Giacomo Oliveira ,
Wandi Zhang
and 14 other authors
,
Travis Law ,
Karl R. Clauser,
Susan Klaeger ,
Siranush Sarkizova,
François Aguet ,
Bo Li ,
Elena Christian ,
Binyamin A. Knisbacher ,
Phuong M. Le,
Christina R. Hartigan,
Hasmik Keshishian,
Annie Apffel ,
Giacomo Oliveira ,
Wandi Zhang
and 14 other authors
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer
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Xin Hong ,
Whijae Roh ,
Ryan J. Sullivan,
Keith H. K. Wong ,
Ben S. Wittner ,
Hongshan Guo,
Taronish D. Dubash,
Moshe Sade-Feldman,
Benjamin Wesley,
Elad Horwitz ,
Genevieve M. Boland ,
Dieuwke L. Marvin,
Todd Bonesteel,
Chenyue Lu ,
François Aguet
and 14 other authors
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,
Whijae Roh ,
Ryan J. Sullivan,
Keith H. K. Wong ,
Ben S. Wittner ,
Hongshan Guo,
Taronish D. Dubash,
Moshe Sade-Feldman,
Benjamin Wesley,
Elad Horwitz ,
Genevieve M. Boland ,
Dieuwke L. Marvin,
Todd Bonesteel,
Chenyue Lu ,
François Aguet
and 14 other authors
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2020
Olivia M. de Goede,
Yuxin Zou,
Nicole M. Ferraro,
Benjamin J. Strober,
Jonah Einson,
Joe R. Davis,
Nathan S. Abell,
Francois Aguet ,
Alvaro N. Barbeira,
Margot Brandt,
Maja Bucan,
Christopher D. Brown,
Stephane E. Castel,
Xin Li,
Emily Greenwald
and 179 other authors
,
Alvaro N. Barbeira,
Margot Brandt,
Maja Bucan,
Christopher D. Brown,
Stephane E. Castel,
Xin Li,
Emily Greenwald
and 179 other authors
Transcriptomic signatures across human tissues identify functional rare genetic variation
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Sarah Kim-Hellmuth,
François Aguet ,
Meritxell Oliva,
Manuel Muñoz-Aguirre,
Silva Kasela,
Valentin Wucher,
Stephane E. Castel,
Yuxin Zou,
Andrew R. Hamel,
Ana Viñuela,
Amy L. Roberts ,
Serghei Mangul,
Xiaoquan Wen,
Gao Wang,
Kristin G. Ardlie
and 168 other authors
,
Meritxell Oliva,
Manuel Muñoz-Aguirre,
Silva Kasela,
Valentin Wucher,
Stephane E. Castel,
Yuxin Zou,
Andrew R. Hamel,
Ana Viñuela,
Amy L. Roberts ,
Serghei Mangul,
Xiaoquan Wen,
Gao Wang,
Kristin G. Ardlie
and 168 other authors
Cell type–specific genetic regulation of gene expression across human tissues
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