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All papers authored by Siobain Duffy

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2022 Catherine D. Aimone

ORCID

, J. Steen Hoyer

ORCID

, Anna E. Dye, David O. Deppong, Siobain Duffy

ORCID

, Ignazio Carbone, Linda Hanley-Bowdoin

ORCID

An experimental strategy for preparing circular ssDNA virus genomes for next-generation sequencing

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2021 J. Steen Hoyer

ORCID

, J. Steen Hoyer, Olivia W. Wilkins, Aanandi Munshi, Emma Wiese, Divya Dubey, Savannah Renard, Karoline Rosendal Hartø Mortensen, Anna E. Dye, Ignazio Carbone, Siobain Duffy

ORCID

, José Trinidad Ascencio-Ibáñez

Rapid multilocus adaptation of clonal cabbage leaf curl virus populations to Arabidopsis thaliana

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Lele Zhao, Erik Lavington

ORCID

, Siobain Duffy

ORCID

Truly ubiquitous CRESS DNA viruses scattered across the eukaryotic tree of life

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Alvin Crespo-Bellido

ORCID

, J. Steen Hoyer

ORCID

, Divya Dubey, Ronica B. Jeannot, Siobain Duffy

ORCID

Interspecies Recombination Has Driven the Macroevolution of Cassava Mosaic Begomoviruses

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2020 J. Steen Hoyer

ORCID

, Vincent N. Fondong, Mary M. Dallas, Catherine Doyle Aimone, David O. Deppong, Siobain Duffy

ORCID

, Linda Hanley-Bowdoin

ORCID

Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon

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LaShanda Williams

ORCID

, Carla Cugini, Siobain Duffy

ORCID

Two Nearly Complete Nosocomial Pathogen Genome Sequences Reconstructed from Early-Middle 20th-Century Dental Calculus

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Evelien M. Adriaenssens

ORCID

, Matthew B. Sullivan

ORCID

, Petar Knezevic

ORCID

, Leonardo J. van Zyl

ORCID

, B. L. Sarkar, Bas E. Dutilh

ORCID

, Poliane Alfenas-Zerbini

ORCID

, Małgorzata Łobocka

ORCID

ORCID

, James Rodney Brister

ORCID

, Andrea I. Moreno Switt

ORCID

, Jochen Klumpp

ORCID

, Ramy Karam Aziz

ORCID

, Jakub Barylski

ORCID

, Jumpei Uchiyama

ORCID

and 21 other authors

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

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2019 L. Zhao, E. Lavington, S. Duffy

ORCID

A comprehensive genealogy of the replication associated protein of CRESS DNA viruses reveals a single origin of intron-containing Rep

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Lele Zhao, Karyna Rosario, Mya Breitbart, Siobain Duffy

ORCID

Eukaryotic Circular Rep-Encoding Single-Stranded DNA (CRESS DNA) Viruses: Ubiquitous Viruses With Small Genomes and a Diverse Host Range

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Lele Zhao, Siobain Duffy

ORCID

Gauging genetic diversity of generalists: A test of genetic and ecological generalism with RNA virus experimental evolution

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2018 Alana Lynn Jacobson, Siobain Duffy

ORCID

, Peter Sseruwagi

Whitefly-transmitted viruses threatening cassava production in Africa

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Lele Zhao, Mansha Seth Pasricha, Dragos Stemate, Alvin Crespo-Bellido, Jacqueline Gagnon, Jeremy Draghi, Siobain Duffy

ORCID

Existing host range mutations constrain further emergence of RNA viruses

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Siobain Duffy

ORCID

Why are RNA virus mutation rates so damn high?

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2017 Willard Mbewe, Stephan Winter, Settumba Mukasa, Fred Tairo, Peter Sseruwagi, Joseph Ndunguru, Siobain Duffy

ORCID

Deep Sequencing Reveals a Divergent Ugandan cassava brown streak virus Isolate from Malawi

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Willard Mbewe

ORCID

, Fred Tairo, Peter Sseruwagi, Joseph Ndunguru, Siobain Duffy

ORCID

, Ssetumba Mukasa, Ibrahim Benesi, Samar Sheat, Marianne Koerbler, Stephan Winter

Variability in P1 gene redefines phylogenetic relationships among cassava brown streak viruses

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Cara A. Faillace, Nicholas S. Lorusso, Siobain Duffy

ORCID

Overlooking the smallest matter: viruses impact biological invasions

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Alison T. M. Lima, José C. F. Silva, Fábio N. Silva, Gloria P. Castillo-Urquiza, Fabyano F. Silva, Yee M. Seah, Eduardo S. G. Mizubuti, Siobain Duffy

ORCID

, F. Murilo Zerbini

The diversification of begomovirus populations is predominantly driven by mutational dynamics

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2015 Karyna Rosario, Yee Mey Seah, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane E. Polston, Siobain Duffy

ORCID

, Mya Breitbart

Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds

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2014 Paul E. Turner, Elizabeth S. C. P. Williams, Chijioke Okeke, Vaughn S. Cooper, Siobain Duffy

ORCID

, John E. Wertz

Antibiotic resistance correlates with transmission in plasmid evolution

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