All papers authored by Muzlifah Haniffa
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2023
Issac Goh 
,
Rachel A. Botting ,
Antony Rose ,
Simone Webb ,
Justin Engelbert ,
Yorick Gitton ,
Emily Stephenson ,
Mariana Quiroga Londoño ,
Michael Mather,
Nicole Mende ,
Ivan Imaz-Rosshandler ,
Lu Yang ,
Dave Horsfall ,
Daniela Basurto-Lozada ,
Nana-Jane Chipampe
and 46 other authors
,
Rachel A. Botting ,
Antony Rose ,
Simone Webb ,
Justin Engelbert ,
Yorick Gitton ,
Emily Stephenson ,
Mariana Quiroga Londoño ,
Michael Mather,
Nicole Mende ,
Ivan Imaz-Rosshandler ,
Lu Yang ,
Dave Horsfall ,
Daniela Basurto-Lozada ,
Nana-Jane Chipampe
and 46 other authors
Yolk sac cell atlas reveals multiorgan functions during human early development
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Josh Moore ,
Daniela Basurto-Lozada ,
Daniela Basurto Lozada,
Sébastien Besson ,
John Bogovic ,
Jordão Bragantini ,
Eva Maxfield Brown ,
Jean-Marie Burel ,
Xavier Casas Moreno ,
Xavier Casas Moreno,
Gustavo Quintas Glasner de Medeiros ,
Erin E. Diel ,
David Gault,
Satrajit S. Ghosh ,
Ilan Gold
and 58 other authors
,
Daniela Basurto-Lozada ,
Daniela Basurto Lozada,
Sébastien Besson ,
John Bogovic ,
Jordão Bragantini ,
Eva Maxfield Brown ,
Jean-Marie Burel ,
Xavier Casas Moreno ,
Xavier Casas Moreno,
Gustavo Quintas Glasner de Medeiros ,
Erin E. Diel ,
David Gault,
Satrajit S. Ghosh ,
Ilan Gold
and 58 other authors
OME-Zarr: a cloud-optimized bioimaging file format with international community support
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Shuang A. Guo ,
Georgina S. Bowyer ,
John R. Ferdinand ,
Mailis Maes ,
Zewen K. Tuong ,
Eleanor Gillman ,
Mingfeng Liao,
Rik G. H. Lindeboom ,
Masahiro Yoshida ,
Kaylee Worlock ,
Hudaa Gopee ,
Emily Stephenson ,
Catherine A. Gao ,
Paul A. Lyons ,
Kenneth G. C. Smith
and 11 other authors
,
Georgina S. Bowyer ,
John R. Ferdinand ,
Mailis Maes ,
Zewen K. Tuong ,
Eleanor Gillman ,
Mingfeng Liao,
Rik G. H. Lindeboom ,
Masahiro Yoshida ,
Kaylee Worlock ,
Hudaa Gopee ,
Emily Stephenson ,
Catherine A. Gao ,
Paul A. Lyons ,
Kenneth G. C. Smith
and 11 other authors
Obesity Is Associated with Attenuated Tissue Immunity in COVID-19
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2022
Josephine L. Barnes ,
Peng He ,
Masahiro Yoshida ,
Kaylee B. Worlock,
Rik G. H. Lindeboom ,
Chenqu Suo ,
J. Patrick Pett ,
J. Patrick Pett,
Anna Wilbrey-Clark ,
Emma Dann ,
Lira Mamanova ,
Laura Richardson ,
Adam Pennycuick ,
Jessica Allen-Hyttinen ,
Iván T. Herczeg
and 19 other authors
,
Peng He ,
Masahiro Yoshida ,
Kaylee B. Worlock,
Rik G. H. Lindeboom ,
Chenqu Suo ,
J. Patrick Pett ,
J. Patrick Pett,
Anna Wilbrey-Clark ,
Emma Dann ,
Lira Mamanova ,
Laura Richardson ,
Adam Pennycuick ,
Jessica Allen-Hyttinen ,
Iván T. Herczeg
and 19 other authors
Early human lung immune cell development and its role in epithelial cell fate
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Chenqu Suo ,
Emma Dann ,
Tuong Zk,
Issac Goh ,
Laura Jardine ,
Rachel A. Botting ,
Vitalii Kleshchevnikov ,
Jong-Eun Park ,
Zewen Kelvin Tuong ,
Emily Stephenson ,
Justin Engelbert,
Botting Ra,
Rasa Elmentaite ,
Cecilia Domínguez Conde ,
Krzysztof Polanski
and 17 other authors
,
Emma Dann ,
Tuong Zk,
Issac Goh ,
Laura Jardine ,
Rachel A. Botting ,
Vitalii Kleshchevnikov ,
Jong-Eun Park ,
Zewen Kelvin Tuong ,
Emily Stephenson ,
Justin Engelbert,
Botting Ra,
Rasa Elmentaite ,
Cecilia Domínguez Conde ,
Krzysztof Polanski
and 17 other authors
Mapping the developing human immune system across organs
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Eleonora Khabirova ,
Laura Jardine ,
Tim H. H. Coorens ,
Simone Webb ,
Taryn D. Treger,
Justin Engelbert ,
Tarryn Porter,
Elena Prigmore ,
Grace Collord,
Alice Piapi ,
Sarah A. Teichmann ,
Sarah Inglott,
Owen Williams ,
Olaf Heidenreich ,
Matthew D. Young
and 5 other authors
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,
Laura Jardine ,
Tim H. H. Coorens ,
Simone Webb ,
Taryn D. Treger,
Justin Engelbert ,
Tarryn Porter,
Elena Prigmore ,
Grace Collord,
Alice Piapi ,
Sarah A. Teichmann ,
Sarah Inglott,
Owen Williams ,
Olaf Heidenreich ,
Matthew D. Young
and 5 other authors
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Tim H. H. Coorens ,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
Gordon C. S. Smith ,
Sam Behjati
,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
Gordon C. S. Smith ,
Sam Behjati
Author Correction: Inherent mosaicism and extensive mutation of human placentas
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2021
Catherine F. Hatton ,
Rachel A. Botting ,
Maria Emilia Dueñas ,
Iram J. Haq ,
Bernard Verdon ,
Benjamin J. Thompson ,
Jarmila Stremenova Spegarova ,
Florian Gothe ,
Emily Stephenson,
Aaron I. Gardner ,
Sandra Murphy ,
Jonathan Scott,
James P. Garnett ,
Sean Carrie,
Jason Powell
and 15 other authors
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,
Rachel A. Botting ,
Maria Emilia Dueñas ,
Iram J. Haq ,
Bernard Verdon ,
Benjamin J. Thompson ,
Jarmila Stremenova Spegarova ,
Florian Gothe ,
Emily Stephenson,
Aaron I. Gardner ,
Sandra Murphy ,
Jonathan Scott,
James P. Garnett ,
Sean Carrie,
Jason Powell
and 15 other authors
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Katy Börner ,
Sarah A. Teichmann ,
Ellen M. Quardokus,
James C. Gee,
Kristen Browne,
David Osumi-Sutherland,
Bruce W. Herr ,
Andreas Bueckle ,
Hrishikesh Paul,
Muzlifah Haniffa ,
Laura Jardine,
Amy Bernard ,
Song-Lin Ding,
Jeremy A. Miller,
Shin Lin
and 21 other authors
,
Sarah A. Teichmann ,
Ellen M. Quardokus,
James C. Gee,
Kristen Browne,
David Osumi-Sutherland,
Bruce W. Herr ,
Andreas Bueckle ,
Hrishikesh Paul,
Muzlifah Haniffa ,
Laura Jardine,
Amy Bernard ,
Song-Lin Ding,
Jeremy A. Miller,
Shin Lin
and 21 other authors
Anatomical structures, cell types and biomarkers of the Human Reference Atlas
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Laura Jardine,
Simone Webb ,
Issac Goh ,
Mariana Quiroga Londoño ,
Gary Reynolds,
Michael Mather ,
Bayanne Olabi,
Emily Stephenson,
Rachel A. Botting ,
Dave Horsfall ,
Justin Engelbert ,
Daniel Maunder,
Nicole Mende ,
Caitlin Murnane,
Emma Dann
and 49 other authors
,
Issac Goh ,
Mariana Quiroga Londoño ,
Gary Reynolds,
Michael Mather ,
Bayanne Olabi,
Emily Stephenson,
Rachel A. Botting ,
Dave Horsfall ,
Justin Engelbert ,
Daniel Maunder,
Nicole Mende ,
Caitlin Murnane,
Emma Dann
and 49 other authors
Blood and immune development in human fetal bone marrow and Down syndrome
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Rasa Elmentaite ,
Stijn van Dongen,
Natsuhiko Kumasaka ,
King Hw,
Kenny Roberts ,
Hamish W. King ,
Monika Dabrowska,
Vitalii Kleshchevnikov,
Sophie Pritchard,
Vieira Sf,
Liam Bolt ,
Aaron Fleming,
Lira Mamanova ,
Sara F. Vieira ,
Emma Dann
and 44 other authors
,
Stijn van Dongen,
Natsuhiko Kumasaka ,
King Hw,
Kenny Roberts ,
Hamish W. King ,
Monika Dabrowska,
Vitalii Kleshchevnikov,
Sophie Pritchard,
Vieira Sf,
Liam Bolt ,
Aaron Fleming,
Lira Mamanova ,
Sara F. Vieira ,
Emma Dann
and 44 other authors
Cells of the human intestinal tract mapped across space and time
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Matthew D. Young ,
Thomas J. Mitchell ,
Lars Custers ,
Thanasis Margaritis,
Francisco Morales-Rodriguez,
Kwasi Kwakwa,
Eleonora Khabirova ,
Gerda Kildisiute ,
Thomas R. W. Oliver ,
Ronald R. de Krijger,
Marry M. van den Heuvel-Eibrink ,
Federico Comitani ,
Alice Piapi ,
Eva Bugallo-Blanco,
Christine Thevanesan
and 30 other authors
,
Thomas J. Mitchell ,
Lars Custers ,
Thanasis Margaritis,
Francisco Morales-Rodriguez,
Kwasi Kwakwa,
Eleonora Khabirova ,
Gerda Kildisiute ,
Thomas R. W. Oliver ,
Ronald R. de Krijger,
Marry M. van den Heuvel-Eibrink ,
Federico Comitani ,
Alice Piapi ,
Eva Bugallo-Blanco,
Christine Thevanesan
and 30 other authors
Single cell derived mRNA signals across human kidney tumors
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Tim H. H. Coorens ,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
D. Stephen Charnock Jones,
Gordon Cs S. Smith ,
Sam Behjati
,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
D. Stephen Charnock Jones,
Gordon Cs S. Smith ,
Sam Behjati
Inherent mosaicism and extensive mutation of human placentas
Download from www.nature.com
Gary Reynolds ,
Peter Vegh ,
James Fletcher ,
Elizabeth F. M. Poyner ,
Emily Stephenson ,
Issac Goh ,
Rachel A. Botting ,
Ni Huang ,
Bayanne Olabi ,
Anna Dubois ,
David Dixon ,
Kile Green ,
Daniel Maunder,
Justin Engelbert ,
Mirjana Efremova
and 34 other authors
,
Peter Vegh ,
James Fletcher ,
Elizabeth F. M. Poyner ,
Emily Stephenson ,
Issac Goh ,
Rachel A. Botting ,
Ni Huang ,
Bayanne Olabi ,
Anna Dubois ,
David Dixon ,
Kile Green ,
Daniel Maunder,
Justin Engelbert ,
Mirjana Efremova
and 34 other authors
Developmental cell programs are co-opted in inflammatory skin disease
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2020
Laura Jardine ,
Urszula Cytlak ,
Merry Gunawan,
Gary Reynolds ,
Kile Green,
Xiao-Nong Wang,
Sarah Pagan,
Maharani Paramitha,
Christopher A. Lamb,
Anna K. Long,
Erin Hurst,
Smeera Nair,
Graham H. Jackson,
Amy Publicover,
Venetia Bigley
and 3 other authors
,
Urszula Cytlak ,
Merry Gunawan,
Gary Reynolds ,
Kile Green,
Xiao-Nong Wang,
Sarah Pagan,
Maharani Paramitha,
Christopher A. Lamb,
Anna K. Long,
Erin Hurst,
Smeera Nair,
Graham H. Jackson,
Amy Publicover,
Venetia Bigley
and 3 other authors
Donor monocyte-derived macrophages promote human acute graft versus host disease
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Jong-Eun Park ,
Rachel A. Botting ,
Cecilia Domínguez Conde ,
Daniel J. Kunz ,
Botting Ra,
Dorin-Mirel Popescu,
Issac Goh ,
Marieke Lavaert ,
Conde Cd,
Emily Stephenson ,
Kenny Roberts ,
Roberta Ragazzini ,
Veronika R. Kedlian ,
Fabrizio de Rita ,
John R. Ferdinand
and 32 other authors
,
Rachel A. Botting ,
Cecilia Domínguez Conde ,
Daniel J. Kunz ,
Botting Ra,
Dorin-Mirel Popescu,
Issac Goh ,
Marieke Lavaert ,
Conde Cd,
Emily Stephenson ,
Kenny Roberts ,
Roberta Ragazzini ,
Veronika R. Kedlian ,
Fabrizio de Rita ,
John R. Ferdinand
and 32 other authors
A cell atlas of human thymic development defines T cell repertoire formation
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2019
Kirstie M. Bertram,
Rachel A. Botting ,
Heeva Baharlou,
Jake W. Rhodes ,
Hafsa Rana,
J. Dinny Graham,
Ellis Patrick ,
James Fletcher,
Toby M. Plasto,
Naomi R. Truong,
Caroline Royle,
Chloe M. Doyle ,
Orion Tong,
Najla Nasr,
Laith Barnouti
and 14 other authors
,
Heeva Baharlou,
Jake W. Rhodes ,
Hafsa Rana,
J. Dinny Graham,
Ellis Patrick ,
James Fletcher,
Toby M. Plasto,
Naomi R. Truong,
Caroline Royle,
Chloe M. Doyle ,
Orion Tong,
Najla Nasr,
Laith Barnouti
and 14 other authors
Identification of HIV transmitting CD11c+ human epidermal dendritic cells
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2018
Matthew D. Young ,
Thomas J. Mitchell ,
Felipe A. Vieira Braga ,
Maxine G. B. Tran ,
Benjamin J. Stewart ,
John R. Ferdinand ,
Grace Collord ,
Rachel A. Botting ,
Dorin-Mirel Popescu,
Kevin W. Loudon,
Roser Vento-Tormo,
Emily Stephenson ,
Alex Cagan,
Sarah J. Farndon ,
Martin Del Castillo Velasco-Herrera
and 23 other authors
,
Thomas J. Mitchell ,
Felipe A. Vieira Braga ,
Maxine G. B. Tran ,
Benjamin J. Stewart ,
John R. Ferdinand ,
Grace Collord ,
Rachel A. Botting ,
Dorin-Mirel Popescu,
Kevin W. Loudon,
Roser Vento-Tormo,
Emily Stephenson ,
Alex Cagan,
Sarah J. Farndon ,
Martin Del Castillo Velasco-Herrera
and 23 other authors
Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors
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Sam Behjati,
Susan Lindsay,
Sarah A. Teichmann ,
Muzlifah Haniffa
,
Muzlifah Haniffa
Mapping human development at single-cell resolution
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2017
Huynh Thi Le Duyen,
Daniela Cerny,
Dinh The Trung,
Jassia Pang,
Sumathy Velumani,
Ying Xiu Toh,
Phan Tu Qui,
Nguyen Van Hao,
Nguyen Van Hao,
Cameron P. Simmons ,
Muzlifah Haniffa ,
Bridget Wills,
Katja Fink
,
Muzlifah Haniffa ,
Bridget Wills,
Katja Fink
Skin dendritic cell and T cell activation associated with dengue shock syndrome
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