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All papers authored by Molly Megraw

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2021 Robert J. Schmitz

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, Alexandre P. Marand

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, Rebecca A. Mosher

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, Franziska Turck

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, Michael J. Axtell

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, Siobhan M. Brady

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, Molly Megraw

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, Blake C. Meyers

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Quality control and evaluation of plant epigenomics data

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2019 S. Ha, E. Dimitrova, S. Hoops, D. Altarawy, M. Ansariola, D. Deb, J. Glazebrook, R. Hillmer, H. Shahin, F. Katagiri

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, J. McDowell, M. Megraw

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, J. Setubal, B. M. Tyler, R. Laubenbacher

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PlantSimLab - a modeling and simulation web tool for plant biologists

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2018 Sergei A. Filichkin, Mitra Ansariola, Valerie N. Fraser, Molly Megraw

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Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties

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Phung Lai, Raviv Raich, Molly Megraw

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Convmd: Convolutive Matrix Decomposition For Classification Of Matrix Data

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Maria G. Ivanchenko, Molly Megraw

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NanoCAGE-XL: An Approach to High-Confidence Transcription Start Site Sequencing

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2017 Mitra Ansariola, Molly Megraw

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, David Koslicki

IndeCut evaluates performance of network motif discovery algorithms

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Sergei A. Filichkin, Molly Megraw

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DNase I SIM: A Simplified In-Nucleus Method for DNase I Hypersensitive Site Sequencing

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2016 Erin E. Sparks, Colleen Drapek, Allison Gaudinier, Song Li, Mitra Ansariola, Ning Shen, Jessica H. Hennacy, Jingyuan Zhang, Gina Turco, Jalean J. Petricka, Jessica Foret, Alexander J. Hartemink, Raluca Gordân, Molly Megraw

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, Siobhan M. Brady and 1 other authors

Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors

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M. Megraw

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, Cumbie Js, Ivanchenko Mg, Filichkin Sa

Small Genetic Circuits and microRNAs: Big Players in Pol-II Transcriptional Control in Plants.

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2015 Taj Morton, Weng-Keen Wong, Molly Megraw

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TIPR: transcription initiation pattern recognition on a genome scale

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Jason S. Cumbie, Maria G. Ivanchenko, Molly Megraw

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NanoCAGE-XL and CapFilter: An approach to genome wide identification of high confidence transcription start sites

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Sergei Filichkin, Henry D. Priest

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, Molly Megraw

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, Todd C. Mockler

Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress

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Maria G. Ivanchenko, Jinsheng Zhu, Bangjun Wang, Eva Medvecká, Yunlong Du, Elisa Azzarello, Stefano Mancuso, Molly Megraw

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, Sergei Filichkin, Joseph G. Dubrovsky, Jiří Friml, Markus Geisler

The cyclophilin A DIAGEOTROPICA gene affects auxin transport in both root and shoot to control lateral root formation

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2014 Filichkin Sa, Palusa Sg, Mockler Tc, Sergei A. Filichkin, Jason S. Cumbie, Cumbie Js, Palitha Dharmawardhana, J. P. Dharmawadhana, Pankaj Jaiswal, J. Palitha Dharmawadhana, Jeff H. Chang, Chang Jh, Saiprasad G. Palusa, Reddy As, A. S. N. Reddy and 2 other authors

Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis

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Satyanarayana Gouthu, Shawn T. O’Neil, Yanming Di, Mitra Ansarolia, Molly Megraw

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, Laurent G. Deluc

A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries

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Taj Morton, Jalean Petricka, David L. Corcoran

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, Song Li, Cara M. Winter, Alexa Carda, Philip N. Benfey, Uwe Ohler, Molly Megraw

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Paired-End Analysis of Transcription Start Sites in Arabidopsis Reveals Plant-Specific Promoter Signatures

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2013 Molly Megraw

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, Sayan Mukherjee, Uwe Ohler

Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits

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2012 Jalean J. Petricka, Monica A. Schauer, Molly Megraw

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, Natalie W. Breakfield, J. Will Thompson, Stoyan Georgiev, Erik J. Soderblom, Uwe Ohler, Martin Arthur Moseley, Ueli Grossniklaus, Philip N. Benfey

The protein expression landscape of the Arabidopsis root

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2011 Siobhan M. Brady, Lifang Zhang, Molly Megraw

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, Natalia Julia Martinez, Eric Jiang, Charles S. Yi, Weilin Liu, Anna Zeng, Mallorie Taylor-Teeples, Dahae Kim, Sebastian Ahnert, Uwe Ohler, Doreen Ware, Albertha J. M. Walhout

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, Philip N. Benfey

A stele-enriched gene regulatory network in the Arabidopsis root

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2010 Hisashi Iizasa, Bjorn-Erik Wulff, Nageswara R. Alla, Manolis Maragkakis, Molly Megraw

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, Artemis Hatzigeorgiou, Dai Iwakiri, Kenzo Takada, Andreas Wiedmer, Louise Showe, Paul Lieberman, Kazuko Nishikura

Editing of Epstein-Barr Virus-encoded BART6 MicroRNAs Controls Their Dicer Targeting and Consequently Affects Viral Latency*

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