All papers authored by Adam M. Phillippy
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2023
Arang Rhie 
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
The complete sequence of a human Y chromosome
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2022
Nicolas Altemose ,
Pragya Sidhwani ,
Lev Uralsky ,
Fedor D. Ryabov ,
Colin J. Shew,
Michael E. G. Sauria ,
Valery A. Shepelev,
Mitchell R. Vollger ,
Arang Rhie ,
Kishwar Shafin ,
Daniel Olson ,
Leonardo Gomes de Lima ,
Tamara Potapova ,
Kristof Tigyi,
Alice Young
and 46 other authors
,
Pragya Sidhwani ,
Lev Uralsky ,
Fedor D. Ryabov ,
Colin J. Shew,
Michael E. G. Sauria ,
Valery A. Shepelev,
Mitchell R. Vollger ,
Arang Rhie ,
Kishwar Shafin ,
Daniel Olson ,
Leonardo Gomes de Lima ,
Tamara Potapova ,
Kristof Tigyi,
Alice Young
and 46 other authors
Complete genomic and epigenetic maps of human centromeres
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Mitchell R. Vollger ,
Xavi Guitart ,
Philip C. Dishuck ,
Ludovica Mercuri ,
William T. Harvey ,
Ariel Gershman ,
Mark Diekhans ,
Arvis Sulovari ,
Katherine M. Munson ,
Alexandra P. Lewis ,
Alexandra M. Lewis,
Kendra Hoekzema ,
David Porubsky ,
Ruiyang Li ,
Sergey Nurk
and 6 other authors
,
Xavi Guitart ,
Philip C. Dishuck ,
Ludovica Mercuri ,
William T. Harvey ,
Ariel Gershman ,
Mark Diekhans ,
Arvis Sulovari ,
Katherine M. Munson ,
Alexandra P. Lewis ,
Alexandra M. Lewis,
Kendra Hoekzema ,
David Porubsky ,
Ruiyang Li ,
Sergey Nurk
and 6 other authors
Segmental duplications and their variation in a complete human genome
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Sergey Aganezov ,
Stephanie M. Yan ,
Daniela C. Soto ,
Melanie Kirsche ,
Samantha Zarate ,
Pavel Avdeyev ,
Dylan J. Taylor ,
Kishwar Shafin ,
Alaina Shumate ,
Chunlin Xiao ,
Justin Wagner,
Jennifer McDaniel ,
Nathan D. Olson ,
Michael E. G. Sauria ,
Mitchell R. Vollger
and 18 other authors
,
Stephanie M. Yan ,
Daniela C. Soto ,
Melanie Kirsche ,
Samantha Zarate ,
Pavel Avdeyev ,
Dylan J. Taylor ,
Kishwar Shafin ,
Alaina Shumate ,
Chunlin Xiao ,
Justin Wagner,
Jennifer McDaniel ,
Nathan D. Olson ,
Michael E. G. Sauria ,
Mitchell R. Vollger
and 18 other authors
A complete reference genome improves analysis of human genetic variation
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Ariel Gershman ,
Michael E. G. Sauria ,
Xavi Guitart ,
Mitchell R. Vollger ,
Paul W. Hook ,
Savannah J. Hoyt ,
Miten Jain ,
Alaina Shumate ,
Roham Razaghi ,
Sergey Koren ,
Nicolas Altemose ,
Gina V. Caldas,
Glennis A. Logsdon ,
Arang Rhie ,
Evan E. Eichler
and 5 other authors
,
Michael E. G. Sauria ,
Xavi Guitart ,
Mitchell R. Vollger ,
Paul W. Hook ,
Savannah J. Hoyt ,
Miten Jain ,
Alaina Shumate ,
Roham Razaghi ,
Sergey Koren ,
Nicolas Altemose ,
Gina V. Caldas,
Glennis A. Logsdon ,
Arang Rhie ,
Evan E. Eichler
and 5 other authors
Epigenetic patterns in a complete human genome
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Sergey Nurk ,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
The complete sequence of a human genome
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Alaina Shumate,
Ann M. Mc Cartney ,
Daniela C. Soto ,
Ivan Sović,
Jonathan Md D. Wood ,
Justin M. Zook ,
Kishwar Shafin ,
Michael Alonge,
Andrey V. Bzikadze,
Chirag Jain,
Giulio Formenti ,
Sergey Koren ,
Glennis A. Logsdon ,
Arkarachai Fungtammasan ,
Karen H. Miga
and 6 other authors
,
Daniela C. Soto ,
Ivan Sović,
Jonathan Md D. Wood ,
Justin M. Zook ,
Kishwar Shafin ,
Michael Alonge,
Andrey V. Bzikadze,
Chirag Jain,
Giulio Formenti ,
Sergey Koren ,
Glennis A. Logsdon ,
Arkarachai Fungtammasan ,
Karen H. Miga
and 6 other authors
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
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Mara K. N. Lawniczak,
Richard Durbin,
Paul Flicek,
Kerstin Lindblad-Toh ,
Xiaofeng Wei,
John M. Archibald ,
William J. Baker ,
Katherine Belov,
Mark L. Blaxter,
Tomas Marques Bonet ,
Anna K. Childers ,
Jonathan A. Coddington ,
Keith A. Crandall ,
Andrew J. Crawford,
Robert P. Davey
and 30 other authors
,
Xiaofeng Wei,
John M. Archibald ,
William J. Baker ,
Katherine Belov,
Mark L. Blaxter,
Tomas Marques Bonet ,
Anna K. Childers ,
Jonathan A. Coddington ,
Keith A. Crandall ,
Andrew J. Crawford,
Robert P. Davey
and 30 other authors
Standards recommendations for the Earth BioGenome Project
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2021
Arang Rhie ,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow,
Arkarachai Fungtammasan,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow,
Arkarachai Fungtammasan,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
Towards complete and error-free genome assemblies of all vertebrate species
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Chentao Yang,
Yang Zhou ,
Stephanie Marcus,
Giulio Formenti ,
Lucie A. Bergeron,
Zhenzhen Song,
Xupeng Bi,
Juraj Bergman ,
Marjolaine Marie C. Rousselle,
Chengran Zhou ,
Long Zhou,
Yuan Deng,
Miaoquan Fang,
Duo Xie ,
Yuanzhen Zhu
and 18 other authors
,
Stephanie Marcus,
Giulio Formenti ,
Lucie A. Bergeron,
Zhenzhen Song,
Xupeng Bi,
Juraj Bergman ,
Marjolaine Marie C. Rousselle,
Chengran Zhou ,
Long Zhou,
Yuan Deng,
Miaoquan Fang,
Duo Xie ,
Yuanzhen Zhu
and 18 other authors
Evolutionary and biomedical insights from a marmoset diploid genome assembly
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Glennis A. Logsdon ,
Mitchell R. Vollger ,
PingHsun Hsieh,
Yafei Mao ,
Mikhail A. Liskovykh,
Sergey Koren ,
Sergey Nurk,
Ludovica Mercuri ,
Philip C. Dishuck ,
Arang Rhie ,
Leonardo G. de Lima ,
Tatiana Dvorkina,
David Porubsky ,
William T. Harvey,
Alla Mikheenko
and 17 other authors
,
Mitchell R. Vollger ,
PingHsun Hsieh,
Yafei Mao ,
Mikhail A. Liskovykh,
Sergey Koren ,
Sergey Nurk,
Ludovica Mercuri ,
Philip C. Dishuck ,
Arang Rhie ,
Leonardo G. de Lima ,
Tatiana Dvorkina,
David Porubsky ,
William T. Harvey,
Alla Mikheenko
and 17 other authors
The structure, function and evolution of a complete human chromosome 8
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Yang Zhou ,
Linda Shearwin-Whyatt ,
Jing Li,
Zhenzhen Song,
Takashi Hayakawa ,
David Stevens,
Jane C. Fenelon ,
Emma Peel ,
Yuanyuan Cheng ,
Filip Pajpach,
Natasha Bradley,
Hikoyu Suzuki,
Masato Nikaido,
Joana Damas,
Tasman Daish
and 27 other authors
,
Linda Shearwin-Whyatt ,
Jing Li,
Zhenzhen Song,
Takashi Hayakawa ,
David Stevens,
Jane C. Fenelon ,
Emma Peel ,
Yuanyuan Cheng ,
Filip Pajpach,
Natasha Bradley,
Hikoyu Suzuki,
Masato Nikaido,
Joana Damas,
Tasman Daish
and 27 other authors
Platypus and echidna genomes reveal mammalian biology and evolution
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2020
Phillip A. Morin ,
Frederick I. Archer ,
Catherine D. Avila,
Jennifer R. Balacco ,
Yury V. Bukhman ,
William Chow ,
Olivier Fedrigo ,
Giulio Formenti ,
Julie A. Fronczek,
Arkarachai Fungtammasan ,
Frances M. D. Gulland ,
Bettina Haase ,
Mads Peter Heide‐Jorgensen,
Mads Peter Heide‐Jorgensen ,
Marlys L. Houck
and 20 other authors
,
Frederick I. Archer ,
Catherine D. Avila,
Jennifer R. Balacco ,
Yury V. Bukhman ,
William Chow ,
Olivier Fedrigo ,
Giulio Formenti ,
Julie A. Fronczek,
Arkarachai Fungtammasan ,
Frances M. D. Gulland ,
Bettina Haase ,
Mads Peter Heide‐Jorgensen,
Mads Peter Heide‐Jorgensen ,
Marlys L. Houck
and 20 other authors
Reference genome and demographic history of the most endangered marine mammal, the vaquita
Download from onlinelibrary.wiley.com
Sergey Nurk ,
Brian P. Walenz ,
Arang Rhie ,
Mitchell R. Vollger ,
Glennis A. Logsdon ,
Robert Grothe,
Karen H. Miga ,
Evan E. Eichler ,
Adam M. Phillippy ,
Sergey Koren
Download from doi.org
,
Brian P. Walenz ,
Arang Rhie ,
Mitchell R. Vollger ,
Glennis A. Logsdon ,
Robert Grothe,
Karen H. Miga ,
Evan E. Eichler ,
Adam M. Phillippy ,
Sergey Koren
Download from doi.org
Kishwar Shafin ,
Trevor Pesout,
Ryan Lorig-Roach,
Marina Haukness,
Hugh E. Olsen,
Colleen Bosworth,
Joel Armstrong,
Kristof Tigyi,
Nicholas Maurer ,
Sergey Koren ,
Fritz J. Sedlazeck ,
Tobias Marschall ,
Simon Mayes,
Vania Costa,
Justin M. Zook
and 17 other authors
,
Trevor Pesout,
Ryan Lorig-Roach,
Marina Haukness,
Hugh E. Olsen,
Colleen Bosworth,
Joel Armstrong,
Kristof Tigyi,
Nicholas Maurer ,
Sergey Koren ,
Fritz J. Sedlazeck ,
Tobias Marschall ,
Simon Mayes,
Vania Costa,
Justin M. Zook
and 17 other authors
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
Download from www.nature.com
2019
Karen H. Miga ,
Sergey Koren ,
Arang Rhie ,
Mitchell R. Vollger ,
Ariel Gershman,
Andrey Bzikadze,
Shelise Brooks,
Edmund Howe,
David Porubsky,
Glennis A. Logsdon ,
Valerie A. Schneider,
Tamara Potapova,
Jonathan Wood,
William Chow,
Joel Armstrong
and 39 other authors
,
Sergey Koren ,
Arang Rhie ,
Mitchell R. Vollger ,
Ariel Gershman,
Andrey Bzikadze,
Shelise Brooks,
Edmund Howe,
David Porubsky,
Glennis A. Logsdon ,
Valerie A. Schneider,
Tamara Potapova,
Jonathan Wood,
William Chow,
Joel Armstrong
and 39 other authors
Telomere-to-telomere assembly of a complete human X chromosome
Download from www.nature.com
2017
Benjamin J. Matthews ,
Olga Dudchenko ,
Sarah Kingan ,
Sergey Koren ,
Igor Antoshechkin ,
Jacob E. Crawford ,
William J. Glassford ,
Margaret Herre ,
Seth N. Redmond ,
Noah H. Rose ,
Gareth D. Weedall ,
Yang Wu ,
Sanjit S. Batra ,
Carlos A. Brito-Sierra ,
Steven D. Buckingham
and 59 other authors
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,
Olga Dudchenko ,
Sarah Kingan ,
Sergey Koren ,
Igor Antoshechkin ,
Jacob E. Crawford ,
William J. Glassford ,
Margaret Herre ,
Seth N. Redmond ,
Noah H. Rose ,
Gareth D. Weedall ,
Yang Wu ,
Sanjit S. Batra ,
Carlos A. Brito-Sierra ,
Steven D. Buckingham
and 59 other authors
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Chirag Jain,
Alexander Dilthey ,
Sergey Koren,
Srinivas Aluru,
Adam M. Phillippy
,
Sergey Koren,
Srinivas Aluru,
Adam M. Phillippy
A fast approximate algorithm for mapping long reads to large reference databases
Download from www.biorxiv.orgMissing publications? Search for publications with a matching author name.