Jean-Philippe Vert

Papers authored by Jean-Philippe Vert

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2015 Alice Schoenauer Sebag, Sandra Plancade, Céline Raulet-Tomkiewicz, Robert Barouki, Jean-Philippe Vert

, Thomas Walter

A generic methodological framework for studying single cell motility in high-throughput time-lapse data

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Kévin Vervier, Pierre Mahé, Maud Tourmoud, Maud Tournoud, Jean-Baptiste Veyrieras, Jean-Philippe Vert

Large-scale Machine Learning for Metagenomics Sequence Classification

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Nelle Varoquaux, Ivan Liachko, Ferhat Ay, Joshua N. Burton, Jay Shendure, Maitreya J. Dunham, Jean-Philippe Vert

, William S. Noble

Accurate identification of centromere locations in yeast genomes using Hi-C

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Alice Schoenauer Sebag, Sandra Plancade, Celine Raulet-Tomkiewicz, Robert Barouki, Jean-Philippe Vert

, Thomas Walter

Infering an ontology of single cell motions from high-throughput microscopy data

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Ferhat Ay, Thanh H. Vu, Michael J. Zeitz, Nelle Varoquaux, Jan E. Carette

, Jean-Philippe Vert

, Andrew R. Hoffman, William S. Noble

Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C

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Elsa Bernard

, Laurent Jacob, Julien Mairal, Eric Viara, Jean-Philippe Vert

A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples

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2014 Ferhat Ay, Evelien M. Bunnik, Nelle Varoquaux, Jean-Philippe Vert

, William Stafford Noble, Karine G. Le Roch

Multiple dimensions of epigenetic gene regulation in the malaria parasitePlasmodium falciparum

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Matahi Moarii, Alice Pinheiro, Brigitte Sigal-Zafrani, Alain Fourquet, Martial Caly, Nicolas Servant, Véronique Stoven, Jean-Philippe Vert

, Fabien Reyal

Epigenomic Alterations in Breast Carcinoma from Primary Tumor to Locoregional Recurrences

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Cendrine Tourette, Francesca Farina, Rafael P. Vazquez-Manrique, Anne-Marie Orfila, Jessica Voisin, Sonia Hernandez, Nicolas Offner, J. Alex Parker, J. Alex Parker, Sophie Menet, Jinho Kim, Si Ho Choi, Jungmok Lyu, Christina K. Edgerly, Kerry Cormier and 9 other authors

The Wnt Receptor Ryk Reduces Neuronal and Cell Survival Capacity by Repressing FOXO Activity During the Early Phases of Mutant Huntingtin Pathogenicity

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Nelle Varoquaux, Ferhat Ay, William Stafford Noble, Jean-Philippe Vert

A statistical approach for inferring the 3D structure of the genome

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Gerard J. P. van Westen

, Herman W. T. van Vlijmen, Gerard J. P. van Westen, Nicholas J. Wang, James C. Costello, Laura M. Heiser, Elisabeth Georgii, Michael P. Menden, Krister Wennerberg, Mehmet Gönen, Suleiman A. Khan

, John-Patrick Mpindi, Costello Jc, Mukesh Bansal

, Heiser Lm and 135 other authors

A community effort to assess and improve drug sensitivity prediction algorithms

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Elsa Bernard

, Laurent Jacob, Julien Mairal, Jean-Philippe Vert

Efficient RNA Isoform Identification and Quantification from RNA-Seq Data with Network Flows

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Ferhat Ay, Evelien M. Bunnik, Nelle Varoquaux, Sebastiaan M. Bol, Jacques Prudhomme, Jean-Philippe Vert

, William Stafford Noble, Karine G. Le Roch, Karine G. Le Roch

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

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Edouard Pauwels, Christian Lajaunie, Jean-Philippe Vert

A Bayesian active learning strategy for sequential experimental design in systems biology

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Toby D. Hocking, Valentina Boeva

, Guillem Rigaill, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Wilfrid Richer, Franck Bourdeaut, Miyuki Suguro, Masao Seto, Francis Bach, Jean-Philippe Vert

SegAnnDB: interactive Web-based genomic segmentation

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Emile Richard, Guillaume Obozinski, Jean-Philippe Vert

Tight convex relaxations for sparse matrix factorization

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Kevin Vervier, Pierre Mahé, Alexandre D'Aspremont, Jean-Baptiste Veyrieras, Jean-Philippe Vert

On learning matrices with orthogonal columns or disjoint supports

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2013 Jean-Louis Plouhinec, Daniel D. Roche, Caterina Pegoraro, Caterina Perogaro, Ana-Leonor Figueiredo, Frédérique Maczkowiak, Lisa J. Brunet, Cécile Milet, Jean-Philippe Vert

, Nicolas Pollet, Richard M. Harland, Anne H. Monsoro-Burq

Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers

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Yang Zhao, Takeyuki Tamura, Tatsuya Akutsu, Jean-Philippe Vert

Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks

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Emile Richard, Francis Bach, Jean-Philippe Vert

Intersecting singularities for multi-structured estimation

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Papers authored by Jean-Philippe Vert