All papers authored by Pieter Dorrestein
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2024
Bipin Rimal,
Stephanie L. Collins 
,
Ceylan E. Tanes,
Edson R. Rocha,
Megan A. Granda,
Sumeet Solanki,
Nushrat J. Hoque,
Emily C. Gentry,
Imhoi Koo ,
Erin R. Reilly,
Fuhua Hao ,
Devendra Paudel ,
Vishal Singh,
Tingting Yan,
Min Soo Kim
and 15 other authors
,
Ceylan E. Tanes,
Edson R. Rocha,
Megan A. Granda,
Sumeet Solanki,
Nushrat J. Hoque,
Emily C. Gentry,
Imhoi Koo ,
Erin R. Reilly,
Fuhua Hao ,
Devendra Paudel ,
Vishal Singh,
Tingting Yan,
Min Soo Kim
and 15 other authors
Bile salt hydrolase catalyses formation of amine-conjugated bile acids
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Simone Zuffa ,
Robin Schmid ,
Anelize Bauermeister,
Paulo Wender P. Gomes ,
Andres M. Caraballo-Rodriguez,
Yasin El Abiead,
Allegra T. Aron,
Emily C. Gentry ,
Jasmine Zemlin,
Michael J. Meehan,
Nicole E. Avalon ,
Robert H. Cichewicz,
Ekaterina Buzun,
Marvic Carrillo Terrazas,
Chia-Yun Hsu
and 94 other authors
,
Robin Schmid ,
Anelize Bauermeister,
Paulo Wender P. Gomes ,
Andres M. Caraballo-Rodriguez,
Yasin El Abiead,
Allegra T. Aron,
Emily C. Gentry ,
Jasmine Zemlin,
Michael J. Meehan,
Nicole E. Avalon ,
Robert H. Cichewicz,
Ekaterina Buzun,
Marvic Carrillo Terrazas,
Chia-Yun Hsu
and 94 other authors
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
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2023
Wout Bittremieux ,
Nicole E. Avalon ,
Sydney P. Thomas,
Sarvar A. Kakhkhorov ,
Alexander A. Aksenov,
Paulo Wender P. Gomes ,
Christine M. Aceves,
Andrés Mauricio Caraballo-Rodríguez,
Julia M. Gauglitz,
William H. Gerwick ,
Tao Huan ,
Alan K. Jarmusch ,
Rima F. Kaddurah-Daouk,
Kyo Bin Kang,
Kyo Bin Kang
and 18 other authors
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,
Nicole E. Avalon ,
Sydney P. Thomas,
Sarvar A. Kakhkhorov ,
Alexander A. Aksenov,
Paulo Wender P. Gomes ,
Christine M. Aceves,
Andrés Mauricio Caraballo-Rodríguez,
Julia M. Gauglitz,
William H. Gerwick ,
Tao Huan ,
Alan K. Jarmusch ,
Rima F. Kaddurah-Daouk,
Kyo Bin Kang,
Kyo Bin Kang
and 18 other authors
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Emily C. Gentry,
Morgan Panitchpakdi,
Allison K. Stewart,
Hsueh-Han Lu ,
Simone Zuffa,
Tingting Yan,
Damian R. Plichta ,
Mingxun Wang ,
Alan K. Jarmusch ,
Mashette Syrkin-Nikolau,
Hera Vlamakis ,
Amy Hemperly,
Niels Vande Casteele,
Ramnik J. Xavier ,
Andrew D. Patterson
and 15 other authors
,
Simone Zuffa,
Tingting Yan,
Damian R. Plichta ,
Mingxun Wang ,
Alan K. Jarmusch ,
Mashette Syrkin-Nikolau,
Hera Vlamakis ,
Amy Hemperly,
Niels Vande Casteele,
Ramnik J. Xavier ,
Andrew D. Patterson
and 15 other authors
Reverse metabolomics for the discovery of chemical structures from humans
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2022
Raphael Reher,
Allegra T. Aron,
Pavla Fajtová ,
Berenike Wagner,
Paolo Stincone,
Alicia I. Pérez-Lorente,
Chenxi Liu,
Ido Y. Ben Shalom ,
Ido Y. Ben Shalom,
Wout Bittremieux ,
Kyowon Jeong ,
Mingxun Wang,
Marie L. Matos-Hernandez ,
Kelsey L. Alexander,
J. H. William Scanlan
and 15 other authors
,
Berenike Wagner,
Paolo Stincone,
Alicia I. Pérez-Lorente,
Chenxi Liu,
Ido Y. Ben Shalom ,
Ido Y. Ben Shalom,
Wout Bittremieux ,
Kyowon Jeong ,
Mingxun Wang,
Marie L. Matos-Hernandez ,
Kelsey L. Alexander,
J. H. William Scanlan
and 15 other authors
Native metabolomics identifies the rivulariapeptolide family of protease inhibitors
Download from www.nature.com
2021
Martin A. Hoffmann ,
Louis-Félix Nothias,
Marcus Ludwig ,
Markus Fleischauer ,
Emily C. Gentry ,
Michael Witting ,
Pieter C. Dorrestein ,
Kai Dührkop ,
Sebastian Böcker
,
Louis-Félix Nothias,
Marcus Ludwig ,
Markus Fleischauer ,
Emily C. Gentry ,
Michael Witting ,
Pieter C. Dorrestein ,
Kai Dührkop ,
Sebastian Böcker
High-confidence structural annotation of metabolites absent from spectral libraries
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Robin Schmid,
Daniel Petras ,
Louis-Félix Nothias,
Mingxun Wang ,
Allegra T. Aron,
Annika Jagels,
Hiroshi Tsugawa ,
Johannes Rainer ,
Mar Garcia-Aloy ,
Kai Dührkop ,
Ansgar Korf ,
Tomáš Pluskal ,
Zdeněk Kameník ,
Alan K. Jarmusch ,
Andrés Mauricio Caraballo-Rodríguez
and 30 other authors
,
Louis-Félix Nothias,
Mingxun Wang ,
Allegra T. Aron,
Annika Jagels,
Hiroshi Tsugawa ,
Johannes Rainer ,
Mar Garcia-Aloy ,
Kai Dührkop ,
Ansgar Korf ,
Tomáš Pluskal ,
Zdeněk Kameník ,
Alan K. Jarmusch ,
Andrés Mauricio Caraballo-Rodríguez
and 30 other authors
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
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Michelle A. Schorn,
Stefan Verhoeven ,
Lars Ridder,
Florian Huber ,
Deepa D. Acharya,
Alexander A. Aksenov ,
Gajender Aleti,
Jamshid Amiri Moghaddam ,
Allegra T. Aron,
Saefuddin Aziz,
Anelize Bauermeister,
Katherine D. Bauman,
Martin Baunach,
Christine Beemelmanns,
J. Michael Beman
and 95 other authors
,
Lars Ridder,
Florian Huber ,
Deepa D. Acharya,
Alexander A. Aksenov ,
Gajender Aleti,
Jamshid Amiri Moghaddam ,
Allegra T. Aron,
Saefuddin Aziz,
Anelize Bauermeister,
Katherine D. Bauman,
Martin Baunach,
Christine Beemelmanns,
J. Michael Beman
and 95 other authors
A community resource for paired genomic and metabolomic data mining
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T. D. Kazandjian ,
D. Petras ,
S. D. Robinson ,
J. van Thiel ,
H. W. Greene ,
K. Arbuckle ,
A. Barlow,
D. A. Carter ,
R. M. Wouters ,
G. Whiteley,
S. C. Wagstaff ,
A. S. Arias ,
L.-O. Albulescu ,
A. Plettenberg Laing ,
C. Hall
and 14 other authors
,
D. Petras ,
S. D. Robinson ,
J. van Thiel ,
H. W. Greene ,
K. Arbuckle ,
A. Barlow,
D. A. Carter ,
R. M. Wouters ,
G. Whiteley,
S. C. Wagstaff ,
A. S. Arias ,
L.-O. Albulescu ,
A. Plettenberg Laing ,
C. Hall
and 14 other authors
Convergent evolution of pain-inducing defensive venom components in spitting cobras
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2020
Helena Mannochio-Russo ,
Paula Carolina P. Bueno ,
Anelize Bauermeister,
Rafael Felipe de Almeida,
Pieter C. Dorrestein ,
Alberto José Cavalheiro,
Vanderlan S. Bolzani
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,
Paula Carolina P. Bueno ,
Anelize Bauermeister,
Rafael Felipe de Almeida,
Pieter C. Dorrestein ,
Alberto José Cavalheiro,
Vanderlan S. Bolzani
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Louis-Félix Nothias,
Justin J. J. van der Hooft ,
Fernando Vargas ,
Kelly C. Weldon,
Michael Witting ,
Heejung Yang ,
Zheng Zhang,
Florian Zubeil,
Mingxun Wang ,
Nothias Lf,
Daniel Petras ,
Robin Schmid,
Kai Dührkop ,
Tam Dang ,
Neha Garg
and 49 other authors
,
Fernando Vargas ,
Kelly C. Weldon,
Michael Witting ,
Heejung Yang ,
Zheng Zhang,
Florian Zubeil,
Mingxun Wang ,
Nothias Lf,
Daniel Petras ,
Robin Schmid,
Kai Dührkop ,
Tam Dang ,
Neha Garg
and 49 other authors
Feature-based molecular networking in the GNPS analysis environment
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Raphael Reher ,
Hyun Woo Kim,
Chen Zhang ,
Huanru Henry Mao,
Mingxun Wang,
Louis-Félix Nothias,
Andres Mauricio Caraballo-Rodriguez,
Evgenia Glukhov,
Bahar Teke,
Tiago Leao,
Kelsey L. Alexander,
Brendan M. Duggan,
Ezra L. Van Everbroeck,
Pieter C. Dorrestein ,
Garrison W. Cottrell
and 1 other authors
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,
Hyun Woo Kim,
Chen Zhang ,
Huanru Henry Mao,
Mingxun Wang,
Louis-Félix Nothias,
Andres Mauricio Caraballo-Rodriguez,
Evgenia Glukhov,
Bahar Teke,
Tiago Leao,
Kelsey L. Alexander,
Brendan M. Duggan,
Ezra L. Van Everbroeck,
Pieter C. Dorrestein ,
Garrison W. Cottrell
and 1 other authors
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Katherine N. Maloney ,
Ryan T. Botts,
Taylor S. Davis,
Bethany K. Okada,
Elizabeth M. Maloney,
Christopher A. Leber,
Oscar Alvarado,
Charlie Brayton,
Andrés Mauricio Caraballo-Rodríguez,
Jason V. Chari,
Brent Chicoine,
J. Chance Crompton,
Sydney R. Davis,
Samantha M. Gromek,
Viqqi Kurnianda
and 8 other authors
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,
Ryan T. Botts,
Taylor S. Davis,
Bethany K. Okada,
Elizabeth M. Maloney,
Christopher A. Leber,
Oscar Alvarado,
Charlie Brayton,
Andrés Mauricio Caraballo-Rodríguez,
Jason V. Chari,
Brent Chicoine,
J. Chance Crompton,
Sydney R. Davis,
Samantha M. Gromek,
Viqqi Kurnianda
and 8 other authors
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Mingxun Wang,
Alan K. Jarmusch,
Fernando Vargas ,
Alexander A. Aksenov ,
Julia M. Gauglitz,
Kelly Weldon ,
Daniel Petras ,
Ricardo da Silva,
Robert Quinn,
Alexey V. Melnik,
Justin J. J. van der Hooft ,
Andrés Mauricio Caraballo-Rodríguez ,
Louis Felix Nothias,
Christine M. Aceves,
Morgan Panitchpakdi
and 21 other authors
,
Alexander A. Aksenov ,
Julia M. Gauglitz,
Kelly Weldon ,
Daniel Petras ,
Ricardo da Silva,
Robert Quinn,
Alexey V. Melnik,
Justin J. J. van der Hooft ,
Andrés Mauricio Caraballo-Rodríguez ,
Louis Felix Nothias,
Christine M. Aceves,
Morgan Panitchpakdi
and 21 other authors
Mass spectrometry searches using MASST
Download from www.nature.com
2019
Laura-Isobel McCall,
Chris Callewaert ,
Qiyun Zhu ,
Se Jin Song,
Amina Bouslimani,
Jeremiah J. Minich,
Madeleine Ernst,
Jean F. Ruiz-Calderon,
Humberto Cavallin,
Henrique S. Pereira,
Atila Novoselac,
Jean Hernandez,
Rafael Rios,
OraLee H. Branch,
Martin J. Blaser
and 4 other authors
,
Qiyun Zhu ,
Se Jin Song,
Amina Bouslimani,
Jeremiah J. Minich,
Madeleine Ernst,
Jean F. Ruiz-Calderon,
Humberto Cavallin,
Henrique S. Pereira,
Atila Novoselac,
Jean Hernandez,
Rafael Rios,
OraLee H. Branch,
Martin J. Blaser
and 4 other authors
Home chemical and microbial transitions across urbanization
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Nicholas A. Bokulich ,
Yoshiki Vazquez-Baeza,
Kyo Bin Kang ,
Christian C. Abnet ,
Gabriel A. Al-Ghalith ,
Harriet Alexander,
Eric J. Alm ,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai ,
Jordan E. Bisanz ,
Kyle Bittinger,
Evan Bolyen ,
Asker Brejnrod,
Colin J. Brislawn
and 99 other authors
,
Yoshiki Vazquez-Baeza,
Kyo Bin Kang ,
Christian C. Abnet ,
Gabriel A. Al-Ghalith ,
Harriet Alexander,
Eric J. Alm ,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai ,
Jordan E. Bisanz ,
Kyle Bittinger,
Evan Bolyen ,
Asker Brejnrod,
Colin J. Brislawn
and 99 other authors
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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Ricardo Roberto da Silva ,
Ricardo R. Da Silva,
Mélissa Nothias-Esposito,
Louis Felix Nothias,
Pascal Retailleau,
Pieter Leyssen,
Julien Paolini ,
Zheng Zhang,
Fanny Roussi ,
David Touboul ,
Pieter C. Dorrestein ,
Marc Litaudon
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,
Ricardo R. Da Silva,
Mélissa Nothias-Esposito,
Louis Felix Nothias,
Pascal Retailleau,
Pieter Leyssen,
Julien Paolini ,
Zheng Zhang,
Fanny Roussi ,
David Touboul ,
Pieter C. Dorrestein ,
Marc Litaudon
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Krizia K. del Rosario,
Amina Bouslimani,
Emmanuel O. Elijah,
Alan K. Jarmusch ,
Fernando Vargas,
Madeleine Ernst,
Mingxun Wang,
Pieter C. Dorrestein ,
Shirley M. Tsunoda,
Ricardo Roberto da Silva
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,
Fernando Vargas,
Madeleine Ernst,
Mingxun Wang,
Pieter C. Dorrestein ,
Shirley M. Tsunoda,
Ricardo Roberto da Silva
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