Researcher
David Baker
University of Washington Howard Hughes Medical Institute
Statistics
42 papers found
Papers authored by David Baker
Refreshing results…
2021
Ian R. Humphreys 
,
Jimin Pei ,
Sergey Ovchinnikov ,
Jing Zhang ,
Minkyung Baek ,
Aditya Krishnakumar ,
Viktoriya G. Stancheva ,
Ivan Anishchenko ,
Zhi Zheng ,
Sudeep Banjade,
Upasana Roy ,
Saket R. Bagde ,
Barnabas Szakal ,
Xiao-Han Li ,
Travis J. Ness
and 15 other authors
,
Jimin Pei ,
Sergey Ovchinnikov ,
Jing Zhang ,
Minkyung Baek ,
Aditya Krishnakumar ,
Viktoriya G. Stancheva ,
Ivan Anishchenko ,
Zhi Zheng ,
Sudeep Banjade,
Upasana Roy ,
Saket R. Bagde ,
Barnabas Szakal ,
Xiao-Han Li ,
Travis J. Ness
and 15 other authors
Computed structures of core eukaryotic protein complexes
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Huan-Chang Liang ,
Mariantonia Costanza ,
Nicole Prutsch,
Mark W. Zimmerman ,
Elisabeth Gurnhofer,
Ivonne A. Montes-Mojarro ,
Brian J. Abraham ,
Nina Prokoph ,
Stefan Stoiber ,
Simone Tangermann,
Cosimo Lobello,
Jan Oppelt ,
Ioannis Anagnostopoulos,
Thomas Hielscher,
Shahid Pervez
and 28 other authors
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,
Mariantonia Costanza ,
Nicole Prutsch,
Mark W. Zimmerman ,
Elisabeth Gurnhofer,
Ivonne A. Montes-Mojarro ,
Brian J. Abraham ,
Nina Prokoph ,
Stefan Stoiber ,
Simone Tangermann,
Cosimo Lobello,
Jan Oppelt ,
Ioannis Anagnostopoulos,
Thomas Hielscher,
Shahid Pervez
and 28 other authors
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Nicholas B. Woodall ,
Zara Weinberg ,
Jesslyn Park,
Florian Busch ,
Richard S. Johnson ,
Mikayla J. Feldbauer ,
Michael Murphy ,
Maggie Ahlrichs ,
Issa Yousif,
Michael J. MacCoss ,
Vicki H. Wysocki ,
Hana El-Samad ,
David Baker
,
Zara Weinberg ,
Jesslyn Park,
Florian Busch ,
Richard S. Johnson ,
Mikayla J. Feldbauer ,
Michael Murphy ,
Maggie Ahlrichs ,
Issa Yousif,
Michael J. MacCoss ,
Vicki H. Wysocki ,
Hana El-Samad ,
David Baker
De novo design of tyrosine and serine kinase-driven protein switches
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Aleksandar Antanasijevic,
Leigh M. Sewall,
Christopher A. Cottrell ,
Diane G. Carnathan,
Luis E. Jimenez,
Julia T. Ngo,
Jennifer B. Silverman ,
Bettina Groschel,
Erik Georgeson ,
Jinal Bhiman,
Raiza Bastidas,
Celia LaBranche ,
Joel D. Allen ,
Jeffrey Copps ,
Hailee R. Perrett
and 17 other authors
,
Diane G. Carnathan,
Luis E. Jimenez,
Julia T. Ngo,
Jennifer B. Silverman ,
Bettina Groschel,
Erik Georgeson ,
Jinal Bhiman,
Raiza Bastidas,
Celia LaBranche ,
Joel D. Allen ,
Jeffrey Copps ,
Hailee R. Perrett
and 17 other authors
Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM
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Minkyung Baek ,
Baek M.,
Jue Wang ,
Alberdina A. van Dijk,
Calvin K. Yip ,
Frank DiMaio ,
DiMaio F.,
Ivan Anishchenko ,
Anishchenko I.,
Justas Dauparas ,
Dauparas J.,
Sergey Ovchinnikov ,
Ovchinnikov S.,
Lee Gr,
Gyu Rie Lee
and 49 other authors
,
Baek M.,
Jue Wang ,
Alberdina A. van Dijk,
Calvin K. Yip ,
Frank DiMaio ,
DiMaio F.,
Ivan Anishchenko ,
Anishchenko I.,
Justas Dauparas ,
Dauparas J.,
Sergey Ovchinnikov ,
Ovchinnikov S.,
Lee Gr,
Gyu Rie Lee
and 49 other authors
Accurate prediction of protein structures and interactions using a three-track neural network
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Parisa Hosseinzadeh ,
Paris R. Watson ,
Timothy W. Craven,
Xinting Li ,
Stephen Rettie,
Fátima Pardo-Avila,
Asim K. Bera,
Vikram Khipple Mulligan,
Peilong Lu ,
Alexander S. Ford,
Brian D. Weitzner ,
Lance J. Stewart ,
Adam P. Moyer ,
Maddalena Di Piazza,
Joshua G. Whalen
and 3 other authors
Download from www.nature.com
,
Paris R. Watson ,
Timothy W. Craven,
Xinting Li ,
Stephen Rettie,
Fátima Pardo-Avila,
Asim K. Bera,
Vikram Khipple Mulligan,
Peilong Lu ,
Alexander S. Ford,
Brian D. Weitzner ,
Lance J. Stewart ,
Adam P. Moyer ,
Maddalena Di Piazza,
Joshua G. Whalen
and 3 other authors
Download from www.nature.com
Ivan Vulovic ,
Qing Yao ,
Young-Jun Park ,
Alexis Courbet ,
Andrew Norris ,
Florian Busch ,
Aniruddha Sahasrabuddhe ,
Hannes Merten ,
Danny D. Sahtoe ,
George Ueda ,
Jorge A. Fallas ,
Sara J. Weaver ,
Yang Hsia ,
Robert A. Langan ,
Andreas Plückthun
and 4 other authors
,
Qing Yao ,
Young-Jun Park ,
Alexis Courbet ,
Andrew Norris ,
Florian Busch ,
Aniruddha Sahasrabuddhe ,
Hannes Merten ,
Danny D. Sahtoe ,
George Ueda ,
Jorge A. Fallas ,
Sara J. Weaver ,
Yang Hsia ,
Robert A. Langan ,
Andreas Plückthun
and 4 other authors
Generation of ordered protein assemblies using rigid three-body fusion
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Danny D. Sahtoe ,
Adrian Coscia,
Nur Mustafaoglu ,
Lauren M. Miller ,
Daniel Olal,
Ivan Vulovic ,
Ta-Yi Yu,
Inna Goreshnik,
Yu-Ru Lin,
Lars Clark,
Florian Busch ,
Lance Stewart,
Vicki H. Wysocki ,
Donald E. Ingber,
Jonathan Abraham
and 1 other authors
,
Adrian Coscia,
Nur Mustafaoglu ,
Lauren M. Miller ,
Daniel Olal,
Ivan Vulovic ,
Ta-Yi Yu,
Inna Goreshnik,
Yu-Ru Lin,
Lars Clark,
Florian Busch ,
Lance Stewart,
Vicki H. Wysocki ,
Donald E. Ingber,
Jonathan Abraham
and 1 other authors
Transferrin receptor targeting by de novo sheet extension
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Yang Hsia ,
Rubul Mout ,
William Sheffler,
Natasha I. Edman ,
Ivan Vulovic,
Young-Jun Park ,
Rachel L. Redler,
Matthew J. Bick,
Asim K. Bera,
Alexis Courbet,
Alex Kang,
T. J. Brunette,
Una Nattermann,
Evelyn Tsai,
Ayesha Saleem
and 5 other authors
,
Rubul Mout ,
William Sheffler,
Natasha I. Edman ,
Ivan Vulovic,
Young-Jun Park ,
Rachel L. Redler,
Matthew J. Bick,
Asim K. Bera,
Alexis Courbet,
Alex Kang,
T. J. Brunette,
Una Nattermann,
Evelyn Tsai,
Ayesha Saleem
and 5 other authors
Design of multi-scale protein complexes by hierarchical building block fusion
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Robby Divine ,
Ha V. Dang ,
George Ueda ,
Jorge A. Fallas ,
Ivan Vulovic ,
William Sheffler ,
Shally Saini ,
Yan Ting Zhao,
Infencia Xavier Raj ,
Peter A. Morawski ,
Madeleine F. Jennewein ,
Leah J. Homad ,
Yu-Hsin Wan ,
Marti R. Tooley,
Franziska Seeger
and 15 other authors
,
Ha V. Dang ,
George Ueda ,
Jorge A. Fallas ,
Ivan Vulovic ,
William Sheffler ,
Shally Saini ,
Yan Ting Zhao,
Infencia Xavier Raj ,
Peter A. Morawski ,
Madeleine F. Jennewein ,
Leah J. Homad ,
Yu-Hsin Wan ,
Marti R. Tooley,
Franziska Seeger
and 15 other authors
Designed proteins assemble antibodies into modular nanocages
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Vikram Khipple Mulligan ,
Sean Workman ,
Tianjun Sun,
Stephen Rettie,
Xinting Li ,
Liam J. Worrall,
Timothy W. Craven,
Dustin T. King,
Parisa Hosseinzadeh ,
Andrew M. Watkins,
P. Douglas Renfrew,
Sharon Guffy,
Jason W. Labonte,
Rocco Moretti,
Richard Bonneau
and 2 other authors
,
Sean Workman ,
Tianjun Sun,
Stephen Rettie,
Xinting Li ,
Liam J. Worrall,
Timothy W. Craven,
Dustin T. King,
Parisa Hosseinzadeh ,
Andrew M. Watkins,
P. Douglas Renfrew,
Sharon Guffy,
Jason W. Labonte,
Rocco Moretti,
Richard Bonneau
and 2 other authors
Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1
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Anastassia A. Vorobieva ,
Paul White ,
Binyong Liang ,
Jim E. Horne ,
Asim K. Bera,
Cameron M. Chow ,
Stacey Gerben ,
Sinduja Marx ,
Alex Kang ,
Alyssa Q. Stiving,
Sophie R. Harvey ,
Dagan C. Marx ,
G. Nasir Khan ,
Karen G. Fleming ,
Vicki H. Wysocki
and 4 other authors
,
Paul White ,
Binyong Liang ,
Jim E. Horne ,
Asim K. Bera,
Cameron M. Chow ,
Stacey Gerben ,
Sinduja Marx ,
Alex Kang ,
Alyssa Q. Stiving,
Sophie R. Harvey ,
Dagan C. Marx ,
G. Nasir Khan ,
Karen G. Fleming ,
Vicki H. Wysocki
and 4 other authors
De novo design of transmembrane β barrels
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2020
Longxing Cao ,
Inna Goreshnik,
Brian Coventry ,
James Brett Case ,
Lauren Miller ,
Lisa Kozodoy,
Rita E. Chen,
Lauren Carter ,
Alexandra C. Walls ,
Young-Jun Park,
Eva-Maria Strauch ,
Lance Stewart ,
Michael S. Diamond ,
David Veesler ,
David Baker
,
Inna Goreshnik,
Brian Coventry ,
James Brett Case ,
Lauren Miller ,
Lisa Kozodoy,
Rita E. Chen,
Lauren Carter ,
Alexandra C. Walls ,
Young-Jun Park,
Eva-Maria Strauch ,
Lance Stewart ,
Michael S. Diamond ,
David Veesler ,
David Baker
De novo design of picomolar SARS-CoV-2 miniprotein inhibitors
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Marc J. Lajoie ,
Scott E. Boyken ,
Alexander I. Salter ,
Jilliane Bruffey ,
Anusha Rajan ,
Robert A. Langan,
Audrey Olshefsky ,
Vishaka Muhunthan ,
Matthew J. Bick ,
Mesfin Gewe ,
Alfredo Quijano-Rubio ,
JayLee Johnson,
Garreck Lenz ,
Alisha Nguyen,
Suzie Pun
and 3 other authors
,
Scott E. Boyken ,
Alexander I. Salter ,
Jilliane Bruffey ,
Anusha Rajan ,
Robert A. Langan,
Audrey Olshefsky ,
Vishaka Muhunthan ,
Matthew J. Bick ,
Mesfin Gewe ,
Alfredo Quijano-Rubio ,
JayLee Johnson,
Garreck Lenz ,
Alisha Nguyen,
Suzie Pun
and 3 other authors
Designed protein logic to target cells with precise combinations of surface antigens
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Julia Koehler Leman ,
Brian D. Weitzner,
Steven M. Lewis,
Jared Adolf-Bryfogle,
Nawsad Alam,
Rebecca F. Alford,
Melanie Aprahamian,
David Baker ,
Kyle A. Barlow ,
Patrick Barth,
Benjamin Basanta ,
Brian J. Bender,
Kristin Blacklock,
Jaume Bonet ,
Scott E. Boyken
and 93 other authors
,
Brian D. Weitzner,
Steven M. Lewis,
Jared Adolf-Bryfogle,
Nawsad Alam,
Rebecca F. Alford,
Melanie Aprahamian,
David Baker ,
Kyle A. Barlow ,
Patrick Barth,
Benjamin Basanta ,
Brian J. Bender,
Kristin Blacklock,
Jaume Bonet ,
Scott E. Boyken
and 93 other authors
Macromolecular modeling and design in Rosetta: recent methods and frameworks
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Aleksandar Antanasijevic ,
George Ueda ,
Philip Jm M. Brouwer,
Jeffrey Copps ,
Deli Huang ,
Joel D. Allen ,
Christopher A. Cottrell ,
Anila Yasmeen,
Leigh M. Sewall ,
Ilja Bontjer,
Thomas J. Ketas,
Hannah L. Turner ,
Zachary T. Berndsen ,
David C. Montefiori,
Per Johan Klasse
and 7 other authors
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,
George Ueda ,
Philip Jm M. Brouwer,
Jeffrey Copps ,
Deli Huang ,
Joel D. Allen ,
Christopher A. Cottrell ,
Anila Yasmeen,
Leigh M. Sewall ,
Ilja Bontjer,
Thomas J. Ketas,
Hannah L. Turner ,
Zachary T. Berndsen ,
David C. Montefiori,
Per Johan Klasse
and 7 other authors
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