All papers authored by Pedro Mendes
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Pedro Mendes
An Overview of Network-Based and -Free Approaches for Stochastic Simulation of Biochemical Systems
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Jahir M. Gutierrez,
Ang Ks,
Gardiner Nj,
Sarantos Kyriakopoulos
and 19 other authors
Recon 2.2: from reconstruction to model of human metabolism.
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Paulo E. Pinto Burke,
Jonathan R. Karr,
Frank T. Bergmann,
Vijayalakshmi Chelliah,
Michael Hucka,
Marcus Krantz,
Wolfram Liebermeister ,
Pedro Mendes ,
Chris J. Myers,
Pinar Pir,
Begum Alaybeyoglu,
Naveen K. Aranganathan,
Kambiz Baghalian,
Arne T. Bittig
and 45 other authors
Toward community standards and software for whole-cell modeling
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Douglas B. Kell
Fitting Transporter Activities to Cellular Drug Concentrations and Fluxes: Why the Bumblebee Can Fly
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Impact of kinetic isotope effects in isotopic studies of metabolic systems
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Julio Saez-Rodriguez,
Klaus Mauch,
Eva Balsa-Canto,
Pedro Mendes ,
Johannes Hager,
Johannes Jaeger ,
Julio R. Banga
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology
Download from dx.doi.org
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Sven Nelander,
Jens B. Nielsen,
Andrea Pagnani,
Natasa Przulj,
Andreas Raue,
Jörg Stelling,
Szymon Stoma
and 4 other authors
Bridging the gaps in systems biology
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What Can We Learn from Global Sensitivity Analysis of Biochemical Systems?
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Wolfram Liebermeister
Systematic Construction of Kinetic Models from Genome-Scale Metabolic Networks
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Argelia Lorence
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Vladimir Shulaev
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Douglas B. Kell
An analysis of a ‘community-driven’ reconstruction of the human metabolic network
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Hanan L. Messiha,
Kathleen M. Carroll,
Catherine L. Winder,
Naglis Malys,
Warwick B. Dunn,
Ettore Murabito,
Neil Swainston,
Joseph O. Dada,
Farid Khan,
Pınar Pir,
Evangelos Simeonidis,
Irena Spasić,
Jill Wishart,
Dieter Weichart
and 11 other authors
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes
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Neil Swainston,
Ronan M. T. Fleming,
Andreas Hoppe,
Swagatika Sahoo,
Maike K. Aurich,
Hulda Haraldsdottir,
Monica L. Mo,
Ottar Rolfsson,
Miranda D. Stobbe,
Stefan G. Thorleifsson,
Rasmus Agren,
Christian Bölling,
Sergio Bordel,
Arvind K. Chavali
and 35 other authors
A community-driven global reconstruction of human metabolism
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A Method for Comparing Multivariate Time Series with Different Dimensions
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