Additional file 4: of Comparative study on gene set and pathway topology-based enrichment methods
Published in 2015 by
Michaela BayerlovĂĄ,
Klaus Jung,
Frank Kramer,
Florian Klemm,
Annalen Bleckmann,
Tim BeiĂbarth
Abstract
Specificity in the simulation studies. Specificity scores of 7 methods under 17 parameter configurations in the simulation study 1 with original pathways with overlapping genes and in the simulation study 2 with non-overlapping pathways with unique gene IDs. Each cell summarizes a median value of 1000 runs. The same colour code key implies for all simulation types. (PDF 135 kb)