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Oxford University Press (OUP), Bioinformatics, 5(26), p. 676-677

DOI: 10.1093/bioinformatics/btq010

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BamView: viewing mapped read alignment data in the context of the reference sequence

Journal article published in 2010 by Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill ORCID, Matthew Berriman
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Summary: BamView is an interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. It supports the BAM (Binary Alignment/Map) format. It can be used in a number of contexts including SNP calling and structural annotation. BamView has also been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features.