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Oxford University Press (OUP), Bioinformatics, 14(25), p. 1841-1842

DOI: 10.1093/bioinformatics/btp328

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rtracklayer: an R package for interfacing with genome browsers

Journal article published in 2009 by Michael Lawrence, Robert Gentleman, Vincent James Carey
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

Summary: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported.