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Oxford University Press, Database, 0(2012), p. bas004-bas004, 2012

DOI: 10.1093/database/bas004

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PRIDE: Quality control in a proteomics data repository

Journal article published in 2012 by Attila Csordas, David Ovelleiro, Rui Wang, Joseph M. Foster, Daniel Ríos, Juan Antonio Vizcaíno ORCID, Henning Hermjakob
This paper is made freely available by the publisher.
This paper is made freely available by the publisher.

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Abstract

The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions.