Published in
Genome Informatics 2009
DOI: 10.1142/9781848165632_0002
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- [citeseerx.ist.psu.edu] | PDF
- [citeseerx.ist.psu.edu] | PDF
- [giw.hgc.jp] | PDF
- [www.jsbi.org] | PDF
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Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast.
Journal article published in 2009 by
Michael Fernandez 
,
Satoshi Fujii,
Hidetoshi Kono,
Akinori Sarai
,
Satoshi Fujii,
Hidetoshi Kono,
Akinori Sarai
This paper is made freely available by the publisher.
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Abstract
We calculated intramolecular interaction energies of DNA by threading DNA sequences around crystal structures of nucleosomes. The strength of the intramolecular energy oscillations at frequency approximately 10 bps for dinucleotides was in agreement with previous nucleosome models. The intramolecular energy calculated along yeast genome positively correlated with nucleosome positioning experimentally measured.