Phylogenies of legume taxa are ecologically structured along a tropical seasonality gradient, which suggests phylogenetic niche conservatism. This seasonality gradient spans Neotropical wet forests, savannas, and highly seasonal drought-prone woody vegetation known as the succulent biome. Ecological phylogenetic structure was investigated using a community phylogenetic approach. We further analyzed bioclimatic and other independent variables that potentially explained phylogenetic beta diversity among 466 floristic sites that spanned the savanna and succulent biomes in eastern South America. Explanatory variables were selected using variance inflation factors, information criteria, and the ability to explain both species and phylogenetic beta diversity. A model involving annual precipitation suggests that a threshold of < 1200 mm explains community phylogenetic structure along the savanna–succulent biome transition. Variables involving temperatures or measures of seasonality were notably lacking from top-ranked models. The abundance and diversity of legumes across the tropical seasonality gradient suggest that a high nitrogen metabolism confers an advantage in one of two ways, both of which are related to rapid growth rates. Legumes adapted to the succulent biome may be responding to regular post-dry-season leaf-flush opportunities. Legumes adapted to the savanna biome may be responding to intermittent post-disturbance growing opportunities. A seasonal predominance of leaf flushing by woody plants implicates the role of ecological stability in the succulent biome because of the need to recover the cost of regenerating short-lived leaves. Ecological stability may be the fundamental cause of ecological phylogenetic structure across the tropical seasonality gradient and required for maintaining high levels of both leaf-flushing legume and succulent plant biodiversity.