Two main types of microbial encrustation were identified in Middle Oxfordian to lowermost Kimmeridgian deposits in the Prebetic Zone (southern Spain), showing existing relationships between skeletal content, fabric and morphology of these organosedimentary structures. Laminated planar and concentric encrustations relate to peloidal fabrics (mainly constituted of microbes = microbial laminated fabrics s. str. and microbial oncoids s. str.), as well as to dense microbial fabrics periodically colonized by encrusting foraminifera (microbial laminated fabrics with nubeculariids and microbial oncoids with nubeculariids). Sedimentation rates, substrate stability and grain size, as well as illumination, influenced microbial growth pattern as major controlling factors in low-energy conditions, and forced palaeogeographic and stratigraphic patterns of distribution. Significant encrustation was identified in terrigenous-poor lithofacies from the middle (Transversarium-Bifurcatus zones) to the outer (Transversarium-Bimammatum zones) shelf in the Prebetic Zone. Rare-to-absent encrustation characterized terrigenous-rich deposits (Bimammatum and Planula zones) in the area.