Published in

Georg Thieme Verlag, Planta Medica: Journal of Medicinal Plant and Natural Product Research, 11(78)

DOI: 10.1055/s-0032-1320194

Links

Tools

Export citation

Search in Google Scholar

Bacterial genome mining for novel natural product discovery

This paper was not found in any repository, but could be made available legally by the author.
This paper was not found in any repository, but could be made available legally by the author.

Full text: Unavailable

Red circle
Preprint: archiving forbidden
Orange circle
Postprint: archiving restricted
Red circle
Published version: archiving forbidden
Data provided by SHERPA/RoMEO

Abstract

Bioinformatics analyses have identified gene clusters encoding cryptic polyketide biosynthetic pathways, not associated with the production of known metabolites, in several actinomycete genome sequences. Discovery of the metabolic products of such cryptic gene clusters promises to unearth a hitherto untapped wealth of novel bioactive compounds. However, a major obstacle to the discovery of novel natural products by genome mining is that many cryptic pathways are expressed poorly or not at all under normal laboratory conditions. The discovery of the stambomycins, a new family of 51-membered macrolides with promising anti-cancer activity, as the products of a novel type I modular polyketide synthase (PKS) system identified in the partial genome sequence of Streptomyces ambofaciens will be described. Activation of expression of the pathway by genetic manipulation of a putative pathway-specific regulatory gene was key to this discovery. The structures of these novel macrolides suggests that their biosynthesis involves novel features, including in trans hydroxylation during polyketide chain assembly to provide the hydroxyl group required for offloading of the fully-assembled polyketide chain from the PKS via macrocyclisation. Experiments aimed at probing this unusual transformation will be described.