The unconformity characteristics supplemented with tentative ages indicate that Luconia and the southern Dangerous Grounds were sub-aerial during the Early Miocene, while the Reed Bank, the northern Dangerous Grounds and parts of the central Dangerous Grounds were mostly submerged except for some islands concentrated on the western edge of the Borneo–Palawan trough. This trough is interpreted as a foreland basin where the flexural forebulge provided shallow marine conditions that promoted reef growth. As the carbonate deposition migrated from the Borneo–Palawan trough toward the Dangerous Grounds we suggest that the flexural forebulge provided shallow water conditions for further reef growth on the eastern Dangerous Grounds.