Abstract2D materials are regarded as promising electrode materials for rechargeable batteries because of their advantages in providing ample active sites and improving electrochemical reaction kinetics. However, it remains a great challenge for 2D materials to fulfill all requirements for high‐performance energy storage devices in terms of electronic conductivity, the number of accessible active sites, structural stability, and mass production capability. Recent advances in constructing 2D material‐based heterostructures offer opportunities for utilizing synergistic effects between the individual blocks to achieve optimized properties and enhanced performance. In this perspective, the latest advances of 2D material‐based heterostructures are summarized, with particular emphasis on their multifunctional roles in high‐performance rechargeable batteries. Synthetic strategies, structural features in mixed dimensionalities, structure engineering strategies, and distinct functionalities of the 2D material‐based heterostructures in various electrochemical applications are systematically introduced. Finally, challenges and perspectives are presented to highlight future opportunities for developing 2D material‐based heterostructures for practical energy storage.