Published in

IOS Press, Studies in Health Technology and Informatics, 2021

DOI: 10.3233/shti210369

Links

Tools

Export citation

Search in Google Scholar

FhirExtinguisher: A FHIR Resource Flattening Tool Using FHIRPath

This paper was not found in any repository, but could be made available legally by the author.
This paper was not found in any repository, but could be made available legally by the author.

Full text: Unavailable

Green circle
Preprint: archiving allowed
Green circle
Postprint: archiving allowed
Red circle
Published version: archiving forbidden
Data provided by SHERPA/RoMEO

Abstract

Data analysis with popular statistical toolchains like R usually needs to be performed on “flat tables” (so-called dataframes). However, data exchange is often done with FHIR, a format that is based on a hierarchical data model. In this paper, we want to present our tool FhirExtinguisher, which tackles the problems of loading FHIR data into statistical tools by extending the FHIRSearch API with an additional projection layer using FHIRPath. This projection layer can be used to select the data elements of interest and create a CSV file, which can be easily read as dataframe by almost any statistical toolchain.