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Nature Research, Nature Methods, 12(18), p. 1496-1498, 2021

DOI: 10.1038/s41592-021-01326-w

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OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies

Journal article published in 2021 by Josh Moore ORCID, Chris Allan, Sébastien Besson ORCID, Jean-Marie Burel, Erin Diel ORCID, David Gault, Kevin Kozlowski, Dominik Lindner, Melissa Linkert, Trevor Manz ORCID, Will Moore ORCID, Constantin Pape ORCID, Christian Tischer, Jason R. Swedlow ORCID
This paper was not found in any repository, but could be made available legally by the author.
This paper was not found in any repository, but could be made available legally by the author.

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Abstract

AbstractThe rapid pace of innovation in biological imaging and the diversity of its applications have prevented the establishment of a community-agreed standardized data format. We propose that complementing established open formats such as OME-TIFF and HDF5 with a next-generation file format such as Zarr will satisfy the majority of use cases in bioimaging. Critically, a common metadata format used in all these vessels can deliver truly findable, accessible, interoperable and reusable bioimaging data.