In this paper, the rainfall trend of the West Coast Plain and Hill Agro-Climatic Region is analyzed for 117 years (1901–2017). This region is a globally recognized biodiversity hotspot and known for one of the highest rainfall receiving regions in India. Rainfall grid dataset is used for the analysis of rainfall trends on monthly, seasonal, and decadal time scales. Modified Mann–Kendall’s test, Linear Regression, Innovative Trend Analysis, Sen’s Slope test, Weibull’s Recurrence Interval, Pearson’s Coefficient of Skewness, Consecutive Disparity Index, Kurtosis, and some other important statistical techniques are employed for trend analysis. Results indicate that the rainfall trend is significant in January, July, August, September as well as the Winter season. Among all the significant trends, January and July showed a decreasing rainfall trend. July has the highest contribution (30%) among all the obtained monotonic trend to annual rainfall and coincidentally has the highest trend magnitude. August and September months with a combined contribution of 30% to annual rainfall, show an increasing monotonic trend with high magnitude whereas Winter season shows a monotonic decreasing rainfall trend with comparatively low magnitudes. Decadal analysis along with the study of recurrence interval of excess and deficit years helps to understand the decadal rhythm of trend and the magnitude of extreme monthly and seasonal events. Skewness reveals that rainfall dataset of all the periodic results is right-skewed and the recurrence interval also supports the skewness results. Sharply decreasing rainfall in July and rising rainfall in August and September is predictive of the impact on agriculture, biodiversity and indicates the rainfall regime shift in the region.